GZNL's Respiratory Data Centre, GZNL-RDC

Ribocentre

A database of ribozymes

Example: RNA   Ribo   Breaker   Ribozymes   Publications   VS with 3D structures   Teams  

Structure

Shows the structure of Ribozymes.
Ribozyme structure - export
Name Description(PDB) Species Phasing Structure Determination PDB Res(Å) Year Journal
Hammerhead Three dimensional structure of a hammerhead ribozyme N/A MIR X-ray diffraction 1HMH 2.6 1994 Nature
Hammerhead The 2.2 A structure of a full-length catalytically active hammerhead ribozyme Schistosoma mansoni N/A X-ray diffraction 3ZD5 2.2 2006 Cell
Hammerhead Hammerhead Ribozyme G12A mutant pre-cleavage N/A MIR X-ray diffraction 2QUS 2.4 2008 PLoS Biol
Hammerhead High-resolution full-length hammerhead ribozyme synthetic construct MR X-ray diffraction 3ZP8 1.55 2013 J Mol Biol
Hammerhead The crystal structure of an all-rna hammerhead ribozyme: a proposed mechanism for rna catalytic cleavage N/A MR X-ray diffraction 1MME 3.1 1995 Cell
Hammerhead Full-length hammerhead ribozyme with g12a substitution at the general base position synthetic construct MR X-ray diffraction 3ZD4 2.2 2014 Acta Crystallogr D Biol Crystallogr
Hammerhead Inhibition of the hammerhead ribozyme cleavage reaction by site-specific binding of tb(iii) N/A N/A X-ray diffraction 359D 2.9 1998 Science
Hammerhead Capturing the structure of a catalytic rna intermediate: rna hammerhead ribozyme, mg(ii)-soaked N/A N/A X-ray diffraction 301D 3.0 1996 Science
Hammerhead Capturing the structure of a catalytic rna intermediate: the hammerhead ribozyme N/A N/A X-ray diffraction 299D 3 1996 Science
Hammerhead Hammerhead ribozyme g12a mutant after cleavage N/A N/A X-ray diffraction 2QUW 2.2 2008 PLoS Biol
Hammerhead The structural basis of hammerhead ribozyme self-cleavage N/A MAD X-ray diffraction 379D 3.1 1998 Cell
Hammerhead Hammerhead ribozyme with 5'-5' g-g linkage: conformational change experiment N/A N/A X-ray diffraction 1Q29 3 2003 J Mol Biol
Hammerhead Two divalent metal ions and conformational changes play roles in the hammerhead ribozyme cleavage reaction-g12a mutant in mg2+ synthetic construct MR X-ray diffraction 5DH6 2.78 2015 Biochemistry
Hammerhead A three-dimensional model for the hammerhead ribozyme based on fluorescence measurements N/A N/A Fluorescence transfer 1RMN N/A 1994 Science
Hammerhead Capturing the structure of a catalytic rna intermediate: rna hammerhead ribozyme, mn(ii)-soaked N/A N/A X-ray diffraction 300D 3 1996 Science
Hammerhead Crosslinked Hammerhead Ribozyme Initial State N/A N/A X-ray diffraction 1NYI 2.85 2003 J Mol Biol
Hammerhead Two divalent metal ions and conformational changes play roles in the hammerhead ribozyme cleavage reaction-WT ribozyme in Mg2+ synthetic construct MR X-ray diffraction 5DQK 2.71 2015 Biochemistry
Hammerhead Full-length hammerhead ribozyme with Mn(II) bound N/A MR X-ray diffraction 2OEU 2 2008 Chem Biol
Hammerhead Two divalent metal ions and conformational changes play roles in the hammerhead ribozyme cleavage reaction- G12A mutant in Zn2+ synthetic construct MR X-ray diffraction 5DH8 3.3 2015 Biochemistry
Hammerhead Two active site divalent ion in the crystal structure of the hammerhead ribozyme bound to a transition state analog-Mg2+ synthetic construct MR X-ray diffraction 5EAO 2.99 2016 Biochemistry
Hammerhead Two divalent metal ions and conformational changes play roles in the hammerhead ribozyme cleavage reaction-WT ribozyme in Mn2+ at low pH synthetic construct MR X-ray diffraction 5DI4 2.95 2015 Biochemistry
Hammerhead Two divalent metal ions and conformational changes play roles in the hammerhead ribozyme cleavage reaction-WT ribozyme in Mn2+ at high pH synthetic construct MR X-ray diffraction 5DI2
   		2.99 2015 Biochemistry
Hammerhead Two divalent metal ions and conformational changes play roles in the hammerhead ribozyme cleavage reaction-G12A mutant in Mn2+ synthetic construct N/A X-ray diffraction 5DH7 3.06 2015 Biochemistry
Hammerhead Two active site divalent ion in the crystal structure of the hammerhead ribozyme bound to a transition state analog-Mn2+ synthetic construct N/A X-ray diffraction 5EAQ 3.2 2016 Biochemistry
HDV The structure of the isolated, central hairpin of the hdv antigenomic ribozyme, nmr, 10 structures Hepatitis delta virus N/A NMR 1ATO N/A 1997 EMBO J
HDV U1a spliceosomal protein/hepatitis delta virus genomic ribozyme complex Hepatitis delta virus, Homo sapiens MAD X-ray diffraction 1DRZ 2.3 1998 Nature
HDV Crystal structure of a C75U mutant Hepatitis Delta Virus ribozyme precursor, in Cu2+ solution Hepatitis delta virus, Homo sapiens Se-MAD,Ir-SAD,MR X-ray diffraction 1SJ4 2.7 2004 Nature
HDV Hepatitis Delta Virus Gemonic Ribozyme Precursor, with Mg2+ Bound Hepatitis delta virus, Homo sapiens Se-MAD,Ir-SAD,MR X-ray diffraction 1SJ3 2.2 2004 Nature
HDV Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Product with C75U Mutaion, cleaved in Imidazole and Mg2+ solutions Hepatitis delta virus, Homo sapiens Se-MAD,Ir-SAD,MR X-ray diffraction 1VC6 2.8 2004 Nature
HDV Crystal Structure of the Wild Type Hepatitis Delta Virus Gemonic Ribozyme Precursor, in EDTA solution Homo sapiens Se-MAD,Ir-SAD,MR X-ray diffraction 1VC5 3.4 2004 Nature
HDV Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, in Imidazole and Sr2+ solution Homo sapiens Se-MAD,Ir-SAD,MR X-ray diffraction 1VC0 2.5 2004 Nature
HDV Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, in Ba2+ solution Homo sapiens Se-MAD,Ir-SAD,MR X-ray diffraction 1VBZ 2.8 2004 Nature
HDV Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, in EDTA solution Homo sapiens Se-MAD,Ir-SAD,MR X-ray diffraction 1VBX 2.7 2004 Nature
HDV Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, in Cobalt Hexammine solution Homo sapiens Se-MAD,Ir-SAD,MR X-ray diffraction 1SJF 2.75 2004 Nature
HDV Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, and Mn2+ bound Homo sapiens Se-MAD,Ir-SAD,MR X-ray diffraction 1VBY 2.9 2004 Nature
HDV Hepatitis Delta Virus ribozyme precursor structure, with C75U mutation, bound to Tl+ and cobalt hexammine (Co(NH3)63+) Homo sapiens MR (Tl+) X-ray diffraction 2OJ3 2.9 2007 Structure
HDV Hepatitis Delta Virus gemonic ribozyme precursor with C75U mutation and bound to monovalent cation Tl+ Homo sapiens MR (Tl+) X-ray diffraction 2OIH 2.4 2007 Structure
HDV A 1.9A crystal structure of the HDV ribozyme precleavage suggests both Lewis acid and general acid mechanisms contribute to phosphodiester cleavage Homo sapiens MR X-ray diffraction 3NKB 1.92 2010 Biochemistry
HDV A Second Look at the HDV Ribozyme Structure and Dynamics. Homo sapiens Rebuild X-ray diffraction 4PR6(原1CX0) 2.3 2014 Nucleic Acids Res
HDV Hepatitis delta virus ribozyme
  		 Hepatitis delta virus, Homo sapiens MAD X-ray diffraction 1CX0 N/A 1998 Nature
HDV A Second Look at the HDV Ribozyme Structure and Dynamics. Homo sapiens Rebuild X-ray diffraction 4PRF(原1VC7) 2.4 2014 Nucleic Acids Res
HDV Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, in Sr2+ solution Hepatitis delta virus, Homo sapiens Se-MAD,Ir-SAD,MR X-ray diffraction 1VC7 N/A 2004 Nature
Hairpin Crystal structure of a hairpin ribozyme in the catalytically-active conformation tobacco ringspot virus MR X-ray diffraction 1M5K 2.4 2002 Science
Hairpin Crystal structure of a junctionless all-RNA hairpin ribozyme tobacco ringspot virus MR X-ray diffraction 2OUE 2.05 2006 Biochemistry
Hairpin Transition State Stabilization by a Catalytic RNA tobacco ringspot virus MR X-ray diffraction 1M5O 2.2 2002 Science
Hairpin Transition State Stabilization by a Catalytic RNA tobacco ringspot virus MR X-ray diffraction 1M5P 2.6 2002 Science
Hairpin Transition State Stabilization by a Catalytic RNA tobacco ringspot virus MR X-ray diffraction 1M5V 2.4 2002 Science
Hairpin An all-RNA Hairpin Ribozyme with mutation U39C tobacco ringspot virus MR X-ray diffraction 1X9C 2.2 2005 Biochemistry
Hairpin An all-RNA Hairpin Ribozyme with mutation U39C tobacco ringspot virus MR X-ray diffraction 1X9K 3.2 2005 Biochemistry
Hairpin The crystal structure of an all-RNA minimal Hairpin Ribozyme with mutant G8I at the cleavage site tobacco ringspot virus MR X-ray diffraction 1ZFT 2.3 2006 Biochemistry
Hairpin The structure of an all-RNA minimal Hairpin Ribozyme with Mutation G8A at the cleavage site tobacco ringspot virus MR X-ray diffraction 1ZFV 2.4 2006 Biochemistry
Hairpin The Structure of a minimal all-RNA Hairpin Ribozyme with the mutant G8U at the cleavage site tobacco ringspot virus MR X-ray diffraction 1ZFX 2.38 2006 Biochemistry
Hairpin Crystal Structure of a minimal, mutant all-RNA hairpin ribozyme (U39C, G8MTU) tobacco ringspot virus MR X-ray diffraction 2BCY 2.7 2006 Biochemistry
Hairpin Crystal Structure of a minimal, mutant all-RNA hairpin ribozyme (U39C, G8I, 2'deoxy A-1) tobacco ringspot virus MR X-ray diffraction 2BCZ 2.4 2006 Biochemistry
Hairpin Crystal Structure of a minimal, native (U39) all-RNA hairpin ribozyme tobacco ringspot virus MR X-ray diffraction 2D2K 2.65 2005 Biochemistry
Hairpin Crystal Structure of a minimal, all-RNA hairpin ribozyme with a propyl linker (C3) at position U39 tobacco ringspot virus MR X-ray diffraction 2D2L 2.5 2005 Biochemistry
Hairpin Crystal structure of a minimal, all RNA hairpin ribozyme with modifications (g8dap, u39c) at ph 8.6 tobacco ringspot virus MR X-ray diffraction 2FGP 2.4 2006 Biochemistry
Hairpin Crystal Structure of a junctioned hairpin ribozyme incorporating 9atom linker and 2'-deoxy 2'-amino U at A-1 tobacco ringspot virus MR X-ray diffraction 2NPY 2.65 2007 Acta Crystallogr D Biol Crystallogr
Hairpin inimally Junctioned Hairpin Ribozyme Incorporates A38G Mutation and a 2',5'-Phosphodiester Linkage at the Active Site tobacco ringspot virus MR X-ray diffraction 3B58 2.65 2008 RNA
Hairpin Crystal Structure of a Minimally Hinged Hairpin Ribozyme Incorporating A38G mutation with a 2'OMe modification at the active site tobacco ringspot virus MR X-ray diffraction 3B5A 2.35 2008 RNA
Hairpin Crystal Structure of a Minimally Hinged Hairpin Ribozyme Incorporating the Ade38Dap Mutation and a 2',5' Phosphodiester Linkage at the Active Site tobacco ringspot virus MR X-ray diffraction 3B5F 2.7 2008 RNA
Hairpin Minimally Hinged Hairpin Ribozyme Incorporates A38DAP Mutation and 2'-O-methyl Modification at the Active Site tobacco ringspot virus MR X-ray diffraction 3B5S 2.25 2008 RNA
Hairpin Minimally Hinged Hairpin Ribozyme Incorporates Ade38(2AP) and 2',5'-Phosphodiester Linkage Mutations at the Active Site tobacco ringspot virus MR X-ray diffraction 3B91 2.75 2008 RNA
Hairpin Minimally Junctioned Hairpin Ribozyme Incorporating A38(2AP) and A-1 2'-O-Me Modifications near Active Site tobacco ringspot virus MR X-ray diffraction 3BBI 2.35 2008 RNA
Hairpin Miminally Junctioned Hairpin Ribozyme Incorporates A38C and 2'5'-phosphodiester Linkage within Active Site tobacco ringspot virus MR X-ray diffraction 3BBK 2.75 2008 RNA
Hairpin Minimally Junctioned Hairpin Ribozyme Incorporates A38C and 2'O-Me Modification at Active Site tobacco ringspot virus MR X-ray diffraction 3BBM 2.65 2008 RNA
Hairpin crystal structure of a minimal, mutant, all-RNA hairpin ribozyme (A38C, A-1OMA) grown from MgCl2 tobacco ringspot virus MR X-ray diffraction 3CR1 2.25 2008 RNA
Hairpin An all-RNA Hairpin Ribozyme with mutation A38N1dA tobacco ringspot virus MR X-ray diffraction 3GS1 2.85 2009 J Am Chem Soc
Hairpin An all-RNA hairpin ribozyme A38N1dA variant with a product mimic substrate strand tobacco ringspot virus MR X-ray diffraction 3GS5 2.8 2009 J Am Chem Soc
Hairpin An all-RNA hairpin ribozyme A38N1dA38 variant with a transition-state mimic substrate strand tobacco ringspot virus MR X-ray diffraction 3GS8 2.9 2009 J Am Chem Soc
Hairpin A Transition-State Interaction Shifts Nucleobase Ionization toward Neutrality To Facilitate Small Ribozyme Catalysis tobacco ringspot virus MR X-ray diffraction 4G6P 2.6 2012 J Am Chem Soc
Hairpin Minimal Hairpin Ribozyme in the Transition State with G8I Variation tobacco ringspot virus MR X-ray diffraction 4G6R 2.9 2012 J Am Chem Soc
Hairpin Minimal Hairpin Ribozyme in the Transition State with A38P Variation tobacco ringspot virus MR X-ray diffraction 4G6S 2.84 2012 J Am Chem Soc
VS Crystal structure of the VS ribozyme - G638A mutant Neurospora SAD-Ir X-ray diffraction 4R4V 3.1 2015 Nat Chem Biol
VS Crystal Structure of the VS ribozyme-A756G mutant Neurospora MR X-ray diffraction 4R4P 3.1 2015 Nat Chem Biol
VS Crystal structure of the VS ribozyme - wild-type C634 Neurospora MR X-ray diffraction 5V3I 3.3 2017 J Am Chem Soc
VS NMR structure of the A730 loop of the Neurospora VS ribozyme Neurospora N/A NMR 2L5Z N/A 2011 Nucleic Acids Res
VS Solution Structure of the Active Site Stem-Loop of the VS Ribozyme N/A N/A NMR 1TJZ N/A 2004 J Mol Biol
VS NMR Structure of the Active Conformation of the VS Ribozyme Cleavage Site N/A N/A NMR 1OW9 N/A 2003 PNAS
VS NMR Localization of Divalent Cations at the Active Site of the Neurospora VS Ribozyme Provides Insights Into RNA-Metal Ion Interactions Neurospora N/A NMR 2MIS N/A 2014 Biochemistry
VS NMR structure of the II-III-VI three-way junction from the VS ribozyme synthetic construct N/A NMR 2N3Q N/A 2015 RNA
VS Solution structure of the vs ribozyme substrate stem-loop N/A N/A NMR 1HWQ N/A 2001 J Mol Biol
VS NMR structure of the II-III-VI three-way junction from the VS ribozyme and identification of magnesium-binding sites using paramagnetic relaxation enhancement Neurospora crassa N/A NMR 2N3R N/A 2015 RNA
VS Solution structure of the VS ribozyme stem-loop V in the presence of MgCl2 N/A N/A NMR 1YN1 N/A 2006 Biochemistry
VS Solution structure of the Neurospora VS ribozyme stem-loop V in the presence of MgCl2 with modeling of bound manganese ions N/A N/A NMR 1YN2 N/A 2006 Biochemistry
VS NMR structure of the VS ribozyme stem-loop V RNA in the absence of multivalent ions. N/A N/A NMR 1TBK N/A 2005 Biochemistry
VS NMR structure of the III-IV-V three-way junction from the VS ribozyme Neurospora crassa N/A NMR 2MTJ N/A 2014 Biochemistry
VS NMR structure of the III-IV-V three-way junction from the VS ribozyme and identification of magnesium-binding sites using paramagnetic relaxation enhancement Neurospora crassa N/A NMR 2MTK N/A 2014 Biochemistry
VS NMR structure of the I-V kissing-loop interaction of the Neurospora VS ribozyme Neurospora crassa N/A NMR 2MI0 N/A 2014 Biochemistry
glmS Pre-cleavage state of glmS ribozyme bound to glucose-6-phosphate Thermoanaerobacter tengcongensis MIRAS X-ray diffraction 2HO7 2.9 2006 Science
glmS Post-cleavage state of glmS ribozyme Thermoanaerobacter tengcongensis MIRAS X-ray diffraction 2GCV 2.1 2006 Science
glmS Structural investigation of the GlmS ribozyme bound to its catalytic cofactor Bacillus anthracis SIRAS X-ray diffraction 2NZ4 2.5 2007 Chemistry & biology
glmS Pre-cleavage state of glmS ribozyme Thermoanaerobacter tengcongensis MIRAS X-ray diffraction 2GCS 2.1 2006 Science
glmS Pre-cleavage state of glmS ribozyme Thermoanaerobacter tengcongensis MIRAS X-ray diffraction 2H0X 2.3 2006 Science
glmS Post-cleavage state of glmS ribozyme Thermoanaerobacter tengcongensis MIRAS X-ray diffraction 2H0W 2.4 2006 Science
glmS Post-cleavage state of glmS ribozyme Thermoanaerobacter tengcongensis MIRAS X-ray diffraction 2HO6 2.8 2006 Science
Twister Crystal Structure of the Twister Ribozyme with the Nucleotide 5'- to the Cleavage Site N/A MAD+SIRAS-Cs/Sm X-ray diffraction 4QJH 3.88 2014 Proc Natl Acad Sci U S A
Twister Crystal Structure of Twister with the Nucleotide 5'- to the Cleavage Site N/A MR+SIR-Ir/Co X-ray diffraction 4QJD 3.1 2014 Proc Natl Acad Sci U S A
Twister Crystal structure of the in-line aligned env22 twister ribozyme N/A Ir-SAD X-ray diffraction 4RGE 2.89 2014 Nat Commun
Twister Crystal structure of the in-line aligned env22 twister ribozyme soaked with Mn2+ N/A Ir-SAD X-ray diffraction 4RGF 3.2 2014 Nat Commun
Twister The crystal structure of OMe substituted twister ribozyme N/A MR X-ray diffraction 5DUN 2.64 2015 Angew Chem Int Ed Engl
Twister Crystal Structure of Twister Ribozyme N/A Br-SAD X-ray diffraction 4OJI 2.3 2014 Nat Chem Biol
Twister-sister Structure-based Insights into Self-Cleavage by a Four-way Junctional Twister-Sister Ribozyme N/A Ir-SAD X-ray diffraction 5Y87 2.13 2017 Nat Commun
Twister-sister Structure-based Insights into Self-Cleavage by a Four-way Junctional Twister-Sister Ribozyme N/A Ir-SAD X-ray diffraction 5Y85 2 2017 Nat Commun
Twister-sister Crystal Structure of the Twister Sister (TS) Ribozyme at 2.0 Angstrom N/A Br-SAD X-ray diffraction 5T5A 2 2017 Nat Chem Biol
Hatchet The structure of Hatchet Ribozyme N/A MR X-ray diffraction 6JQ5 2 2019 Proc Natl Acad Sci USA
Hatchet Hatchet Ribozyme Structure soaking with Ir(NH3)6+ N/A Ir-SAD X-ray diffraction 6JQ6 2.63 2019 Proc Natl Acad Sci USA
Pistol The native structure of native pistol ribozyme N/A MR X-ray diffraction 5K7C 2.7 2016 Nat Chem Biol
Pistol The structure of native pistol ribozyme, bound to Iridium N/A Ir-SAD X-ray diffraction 5K7D 2.68 2016 Nat Chem Biol
Pistol The structure of pistol ribozyme, soaked with Mn2+ N/A MR X-ray diffraction 5K7E 3.27 2016 Nat Chem Biol
Pistol Crystal structure of Pistol, a class of self-cleaving ribozyme N/A Sm-MAD X-ray diffraction 5KTJ 2.97 2017 Proc Natl Acad Sci USA
Pistol The structure of pistol ribozyme bound to magnesium N/A Br-SAD X-ray diffraction 6R47 3.1 2019 J Am Chem Soc
Pistol Pistol ribozyme transition-state analog vanadate N/A MR X-ray diffraction 6UEY 2.8 2020 Angew Chem Int Ed Engl
Pistol Pistol ribozyme product crystal structure N/A MR X-ray diffraction 6UFJ 2.6 2020 Angew Chem Int Ed Engl
Pistol Pistol ribozyme transition-state analog vanadate N/A MR X-ray diffraction 6UF1 3.1 2020 Angew Chem Int Ed Engl
Pistol Pistol ribozyme transition-state analog vanadate N/A MR X-ray diffraction 6UFK 3.1 2020 Angew Chem Int Ed Engl
Group I self-splicing intron Crystal structure of a self-splicing group Ⅰ intron with both exons Homo sapiens SIRAS；SAD；MAD X-ray diffraction 1U6B 3.1 2004 Nature
Group I self-splicing intron Structure of the Tetrahymena Ribozyme: Base Triple Sandwich and Metal Ion at the Active Site N/A SAD-Ir；MAD-Ir X-ray diffraction 1X8W 3.8 2004 Mol Cell
Group I self-splicing intron Crystal structure of an active group I ribozyme-product complex Staphylococcus virus Twort MIR X-ray diffraction 1Y0Q 3.6 2005 Nat Struct Mol Biol
Group I self-splicing intron Crystal structure of a group I intron/two exon complex that includes all catalytic metal ion ligands. Homo sapiens N/A X-ray diffraction 1ZZN 3.37 2005 Science
Group I self-splicing intron Apo L-21 ScaI Tetrahymena ribozyme Tetrahymena thermophila N/A Electron microscopy 7EZ0 3.14 2021 Nature
Group I self-splicing intron Crystal Structure of a Mutant (C109G,G212C) P4-P6 Domain of the Group I Intron from Tetrahymena Thermophilia N/A MR X-ray diffraction 1L8V 2.8 2002 Proc Natl Acad Sci U S A
Group I self-splicing intron J4/5 Loop from the Candida albicans and Candida dubliniensis Group I Introns N/A N/A NMR 1TUT N/A 2004 Biochemistry
Group I self-splicing intron Group I self-splicing intron P4-P6 domain mutant U131A (with isopropanol soaking) Tetrahymena thermophila N/A X-ray diffraction 6BJX 3.14 2018 Structure
Group I self-splicing intron Group I self-splicing intron P4-P6 domain mutant U131A (without isopropanol soaking) Tetrahymena thermophila N/A X-ray diffraction 6D8L 3.14 2018 Structure
Group I self-splicing intron Group I self-splicing intron P4-P6 domain mutant A125U/G126U Tetrahymena thermophila N/A X-ray diffraction 6D8M 3.7 2018 Structure
Group I self-splicing intron Jak1 with compound 23 Homo sapiens N/A X-ray diffraction 6DBN 2.48 2019 J Med Chem
Group I self-splicing intron Group I self-splicing intron P4-P6 domain mutant A230U Tetrahymena thermophila N/A X-ray diffraction 6D8O 2.8 2018 Structure
Lariat capping ribozyme Speciation of a group I intron into a lariat capping ribozyme Didymium iridis MAD-Ir X-ray diffraction 4P8Z 3.85 2014 PNAS
Lariat capping ribozyme Speciation of a group I intron into a lariat capping ribozyme (Circularly permutated ribozyme) Didymium iridis MAD-Ir X-ray diffraction 4P95 2.5 2014 PNAS
Lariat capping ribozyme peciation of a group I intron into a lariat capping ribozyme (Heavy atom derivative) Didymium iridis MAD-Ir X-ray diffraction 4P9R 2.7 2014 PNAS
Lariat capping ribozyme Lariat-capping ribozyme (circular permutation form) Didymium iridis MAD-Ir X-ray diffraction 6GYV 2.5 2014 PNAS
Lariat capping ribozyme Lariat-capping ribozyme with a shortened DP2 stem loop Didymium iridis MAD-Ir X-ray diffraction 6G7Z 3.3 2019 RNA
Group II self-splicing intron Crystal Structure of a RNA Molecule Containing Domain 5 and 6 of the Yeast ai5g Group II Self-splicing Intron N/A MAD X-ray diffraction 1KXK 3 2002 Science
Group II self-splicing intron Crystal structure of a self-spliced group II intron N/A MAD-Yb&Ir X-ray diffraction 3BWP 3.1 2008 Science
Group II self-splicing intron Tertiary Architecture of the Oceanobacillus Iheyensis Group II Intron N/A N/A X-ray diffraction 3IGI 3.125 2009 RNA
Group II self-splicing intron Crystal structure of a eukaryotic group II intron lariat Pylaiella littoralis MAD X-ray diffraction 4R0D 3.676 2014 Nature
Group II self-splicing intron Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Tl+ and Mg2+ Oceanobacillus iheyensis MR X-ray diffraction 4E8Q 2.84 2012 Cell
Group II self-splicing intron Oceanobacillus iheyensis group II intron domain 1 with iridium hexamine Oceanobacillus iheyensis HTE831 SAD-Ir X-ray diffraction 4Y1N 3 2015 Nat Chem Biol
Group II self-splicing intron Oceanobacillus iheyensis group II intron domain 1 Oceanobacillus iheyensis HTE831 SAD-Ir X-ray diffraction 4Y1O 2.95 2015 Nat Chem Biol
Group II self-splicing intron Structure of the lariat form of a chimeric derivative of the Oceanobacillus iheyensis group II intron in the presence of NH4+ and MG2+. Oceanobacillus iheyensis MR X-ray diffraction 5J01 3.39 2016 Science
Group II self-splicing intron Structure a of Group II Intron Complexed with its Reverse Transcriptase Lactococcus lactis N/A Electron microscopy 5G2Y 4.5 2016 Nat Struct Mol Biol
Group II self-splicing intron Structure of the lariat form of a chimeric derivative of the Oceanobacillus iheyensis group II intron in the presence of NH4+, MG2+ and an inactive 5' exon. Oceanobacillus iheyensis MR X-ray diffraction 5J02 3.493 2016 Science
Group II self-splicing intron Specific phosphorothioate substitution within domain 6 of a group II intron ribozyme leads to changes in local structure and metal ion binding Saccharomyces cerevisiae N/A NMR 6EZ0 N/A 2018 J Biol Inorg Chem
Group II self-splicing intron Structure of a group II intron retroelement after DNA integration Thermosynechococcus vestitus ,Thermosynechococcus vestitus BP-1 N/A Electron microscopy 6MEC 3.6 2019 Cell
Bacterial RNase P RNase P protein from Bacillus subtilis Bacillus subtilis MIR X-ray diffraction 1A6F 2.6 1998 Science
Bacterial RNase P RNase P protein from Thermotoga maritima Thermotoga maritima SAD-Se X-ray diffraction 1NZ0 1.2 2003 Proc Natl Acad Sci U S A
Bacterial RNase P Crystal structure of the specificity domain of Ribonuclease P RNA Bacillus subtilis MAD-Pb X-ray diffraction 1NBS 3.15 2003 Nature
Bacterial RNase P Crystal structure of the specificity domain of Ribonuclease P of the A-type N/A SAD-Ba X-ray diffraction 1U9S 2.9 2004 Science
Bacterial RNase P Crystal structure of the RNA subunit of Ribonuclease P. Bacterial A-type N/A SIRAS X-ray diffraction 2A2E 3.85 2005 Nature
Bacterial RNase P Crystal Structure of Bacterial Ribonuclease P RNA N/A MAD-Os X-ray diffraction 2A64 3.3 2005 Proc Natl Acad Sci U S A
Bacterial RNase P Mapping metal-binding sites in the catalytic domain of bacterial RNase P RNA N/A MR X-ray diffraction 3DHS 3.6 2009 RNA
Bacterial RNase P Structure of a Bacterial Ribonuclease P Holoenzyme in Complex with tRNA Thermotoga maritima MR / MAD / MIRAS X-ray diffraction 3Q1Q 3.8 2010 Nature
Bacterial RNase P Crystal structure of a bacterial RNase P holoenzyme in complex with TRNA and in the presence of 5' leader Thermotoga maritima MR / MAD / MIRAS X-ray diffraction 3Q1R 4.2 2010 Nature
Archaeal RNase P Crystal structure analysis of protein component Ph1496p of P.horikoshii ribonuclease P Pyrococcus horikoshii MR X-ray diffraction 2CZW 1.9 2006 Biochem Biophys Res Commun
Archaeal RNase P cryo-EM structure of an archaeal Ribonuclease P Methanocaldococcus jannaschii DSM 2661, Methanocaldococcus jannaschii N/A Electron microscopy 6K0A 4.6 2019 Nat Commun
Archaeal RNase P cryo-EM structure of archaeal Ribonuclease P with mature tRNA Methanocaldococcus jannaschii DSM 2661, Escherichia coli, Methanocaldococcus jannaschii N/A Electron microscopy 6K0B 4.3 2019 Nat Commun
Nuclear RNase P Cryo-EM structure of yeast Ribonuclease P Saccharomyces cerevisiae S288C N/A Electron microscopy 6AGB 3.5 2018 Science
Nuclear RNase P Cryo-EM structure of yeast Ribonuclease P with pre-tRNA substrate Saccharomyces cerevisiae S288C N/A Electron microscopy 6AH3 3.48 2018 Science
Nuclear RNase P Cryo-EM structure of human Ribonuclease P Homo sapiens N/A Electron microscopy 6AHR 3.9 2018 Cell
Nuclear RNase P Cryo-EM structure of human Ribonuclease P with mature tRNA Homo sapiens N/A Electron microscopy 6AHU 3.66 2018 Cell
Nuclear RNase P Crystal structure of human RPP40 Homo sapiens SAD-Se X-ray diffraction 6AHV 2.6 2018 Cell
RNase MRP Structure of yeast RNase MRP holoenzyme Saccharomyces cerevisiae S288C N/A Electron microscopy 6W6V 3 2020 Nat Commun
RNase MRP Cryo-EM structure of yeast Ribonuclease MRP Saccharomyces cerevisiae S288C N/A Electron microscopy 7C79 2.5 2020 Science
RNase MRP Cryo-EM structure of yeast Ribonuclease MRP with substrate ITS1 Saccharomyces cerevisiae S288C, Saccharomyces cerevisiae N/A Electron microscopy 7C7A 2.8 2020 Science