Publications

List of all the articles of Ribozyme.

Ribozyme publication - export

Year	Author	Title	Ribozyme name	Description	Journal
2004	Adams, P. L., M. R. Stahley, A. B. Kosek, J. Wang and S. A. Strobel	Crystal structure of a self-splicing group I intron with both exons.	Group I self-splicing intron	Crystal structure of Azoarcus group I intron with both exons	Nature 430 (6995): 45-50.
2004	Guo, F., A. R. Gooding and T. R. Cech	Structure of the Tetrahymena ribozyme: base triple sandwich and metal ion at the active site.	Group I self-splicing intron	Crystal structure of an active Tetrahymena ribozyme	Mol Cell 16 (3): 351-62.
2005	Golden, B. L., H. Kim and E. Chase	Crystal structure of a phage Twort group I ribozyme-product complex.	Group I self-splicing intron	Crystal structure of phage Twort group I ribozyme-product complex	Nat Struct Mol Biol 12 (1): 82-9.
2005	Stahley, M. R. and S. A. Strobel	Structural evidence for a two-metal-ion mechanism of group I intron splicing.	Group I self-splicing intron	Crystal structure of a catalytically active Azoarcus group I intron splicing intermediate	Science 309 (5740): 1587-90.
2021	Su, Z., K. Zhang, K. Kappel, S. Li, M. Z. Palo, G. D. Pintilie, R. Rangan, B. Luo, Y. Wei, R. Das and W. Chiu	Cryo-EM structures of full-length Tetrahymena ribozyme at 3.1 A resolution.	Group I self-splicing intron	Cryo-EM structures of full-length Tetrahymena ribozyme	Nature 596 (7873): 603-607.
1989	Williamson, C. L., N. M. Desai and J. M. Burke	Compensatory mutations demonstrate that P8 and P6 are RNA secondary structure elements important for processing of a group I intron.	Group I self-splicing intron	Verify the existence and importance of P6, P8	Nucleic Acids Res 17 (2): 675-89.
1989	Doudna, J. A., B. P. Cormack and J. W. Szostak	RNA structure, not sequence, determines the 5' splice-site specificity of a group I intron.	Group I self-splicing intron	Conserved UG is an important recognition element for determining guanosine attack sites	Proc Natl Acad Sci U S A 86 (19): 7402-6.
1989	Flor, P. J., J. B. Flanegan and T. R. Cech	A conserved base pair within helix P4 of the Tetrahymena ribozyme helps to form the tertiary structure required for self-splicing.	Group I self-splicing intron	The conserved base pair C109-G212 in P4 contributes to the tertiary structure required for self-splicing	EMBO J 8 (11): 3391-9.
1982	Kruger, K., P. J. Grabowski, A. J. Zaug, J. Sands, D. E. Gottschling and T. R. Cech	Self-splicing RNA: autoexcision and autocyclization of the ribosomal RNA intervening sequence of Tetrahymena.	Group I self-splicing intron	Discovery	Cell 31 (1): 147-57.
1982	Davies, R. W., R. B. Waring, J. A. Ray, T. A. Brown and C. Scazzocchio	Making ends meet: a model for RNA splicing in fungal mitochondria.	Group I self-splicing intron	Determination of shared secondary structure	Nature 300 (5894): 719-24.
1986	Zaug, A. J. and T. R. Cech	The intervening sequence RNA of Tetrahymena is an enzyme.	Group I self-splicing intron	The intervening sequence RNA of Tetrahymena is an enzyme	Science 231 (4737): 470-5.
1988	Price, J. V. and T. R. Cech	Determinants of the 3' splice site for self-splicing of the Tetrahymena pre-rRNA.	Group I self-splicing intron	ωG is closely related to the choice of 3' splice site	Genes Dev 2 (11): 1439-47.
1990	Michel, F. and E. Westhof	Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis.	Group I self-splicing intron	3D models of group I intron based on comparative sequence analysis	J Mol Biol 216 (3): 585-610.
1996	Cate, J. H., A. R. Gooding, E. Podell, K. Zhou, B. L. Golden, C. E. Kundrot, T. R. Cech and J. A. Doudna	Crystal structure of a group I ribozyme domain: principles of RNA packing.	Group I self-splicing intron	Crystal structure of Tetrahymena P4-P6 domain	Science 273 (5282): 1678-85.
1998	Golden, B. L., A. R. Gooding, E. R. Podell and T. R. Cech	A preorganized active site in the crystal structure of the Tetrahymena ribozyme.	Group I self-splicing intron	Crystal structure of an engineered, active Tetrahymena ribozyme at 5.0 Å resolution	Science 282 (5387): 259-64.
2011	Benz-Moy, T. L. and D. Herschlag	Structure-function analysis from the outside in: long-range tertiary contacts in RNA exhibit distinct catalytic roles.	Group I self-splicing intron	Long-range tertiary contacts in RNA exhibit distinct catalytic roles	Biochemistry 50 (40): 8733-55.
2022	Liu, D., F. A. Thelot, J. A. Piccirilli, M. Liao and P. Yin	Sub-3-A cryo-EM structure of RNA enabled by engineered homomeric self-assembly.	Group I self-splicing intron	Tetrahymena group I intron at 2.98-Å resolution overall (2.85 Å for the core)	Nat Methods 19 (5): 576-585.
1994	Damberger, S. H. and R. R. Gutell	A comparative database of group I intron structures.	Group I self-splicing intron	Comparative database	Nucleic Acids Res 22 (17): 3508-10.
2008	Zhou, Y., C. Lu, Q. J. Wu, Y. Wang, Z. T. Sun, J. C. Deng and Y. Zhang	GISSD: Group I Intron Sequence and Structure Database.	Group I self-splicing intron	Sequence and structure database	Nucleic Acids Res 36 (Database issue): D31-7.
2009	Vicens, Q. and T. R. Cech	A natural ribozyme with 3',5' RNA ligase activity.	A natural ribozyme with 3',5' RNA ligase activity	Discovery	Nat Chem Biol 5(2): 97-9.
2004	J. Proudfoot and A. Akoulitchev	Autocatalytic RNA cleavage in the human beta-globin pre-mRNA promotes transcription termination.	CoTC ribozyme(Beta-globin co-transcriptional cleavage ribozyme)	Discovery that the CoTC process in the human beta-globin gene involves an RNA self-cleaving activity	Nature 432(7016): 526-530.
2006	Salehi-Ashtiani, K., A. Luptak, A. Litovchick and J. W. Szostak	A genomewide search for ribozymes reveals an HDV-like sequence in the human CPEB3 gene.	CPEB3 ribozyme	A HDV-like sequence in the human CPEB3 gene	Science 313 (5794): 1788-92.
2014	Skilandat, M., M. Rowinska-Zyrek and R. K. Sigel	Solution structure and metal ion binding sites of the human CPEB3 ribozyme's P4 domain.	CPEB3 ribozyme	NMR solution structure of CPEB3 ribozyme's P4 domain	J Biol Inorg Chem 19 (6): 903-12.
2016	Skilandat, M., M. Rowinska-Zyrek and R. K. Sigel	Secondary structure confirmation and localization of Mg2+ ions in the mammalian CPEB3 ribozyme.	CPEB3 ribozyme	NMR studies confirm secondary structure and Mg2+ location in CPEB3 ribozyme	RNA 22 (5): 750-63.
2021	Bendixsen, D. P., T. B. Pollock, G. Peri and E. J. Hayden	Experimental Resurrection of Ancestral Mammalian CPEB3 Ribozymes Reveals Deep Functional Conservation.	CPEB3 ribozyme	The functional conservation of CPEB3 ribozyme in mammalian evolution	Mol Biol Evol 38 (7): 2843-2853.
2014	Meyer, M., H. Nielsen, V. Olieric, P. Roblin, S. D. Johansen, E. Westhof and B. Masquida	Speciation of a group I intron into a lariat capping ribozyme.	Lariat capping ribozyme	Crystal structures of the precleavage and postcleavage lariat-capping ribozymes	Proc Natl Acad Sci U S A 111(21): 7659-7664.
2002	Johansen, S., C. Einvik and H. Nielsen	DiGIR1 and NaGIR1: naturally occurring group I-like ribozymes with unique core organization and evolved biological role.	Lariat capping ribozyme	REVIEW	Biochimie 84(9): 905-912.
2002	Vader, A., S. Johansen and H. Nielsen	The group I-like ribozyme DiGIR1 mediates alternative processing of pre-rRNA transcripts in Didymium iridis.	Lariat capping ribozyme	DiGIR1 mediates alternative processing of pre-rRNA transcripts in Didymium iridis	Eur J Biochem 269(23): 5804-5812.
2014	Tang, Y., H. Nielsen, B. Masquida, P. P. Gardner and S. D. Johansen	Molecular characterization of a new member of the lariat capping twin-ribozyme introns.	Lariat capping ribozyme	Molecular characterization of a new member of the lariat capping twin-ribozyme introns	Mob DNA 5: 25.
2021	Pietschmann, M., G. Tempel, M. Halladjian, N. Krogh and H. Nielsen	Use of a Lariat Capping Ribozyme to Study Cap Function In Vivo.	Lariat capping ribozyme	Use of a lariat capping ribozyme to study cap function in vivo	Methods Mol Biol 2167: 271-285.
1994	Johansen, S. and V. M. Vogt	An intron in the nuclear ribosomal DNA of Didymium iridis codes for a group I ribozyme and a novel ribozyme that cooperate in self-splicing.	Lariat capping ribozyme	Sequence discovered	Cell 76(4): 725-734.
1995	Decatur, W. A., C. Einvik, S. Johansen and V. M. Vogt	Two group I ribozymes with different functions in a nuclear rDNA intron.	Lariat capping ribozyme	Catalytic RNA element renamed as the group I-like ribozyme, GIR1	EMBO J 14(18): 4558-4568.
2005	Nielsen, H., E. Westhof and S. Johansen	An mRNA is capped by a 2', 5' lariat catalyzed by a group I-like ribozyme.	Lariat capping ribozyme	GIR1 makes tiny lariats	Science 309(5740): 1584-1587.
2008	eckert, B., H. Nielsen, C. Einvik, S. D. Johansen, E. Westhof and B. Masquida	Molecular modelling of the GIR1 branching ribozyme gives new insight into evolution of structurally related ribozymes.	Lariat capping ribozyme	Molecular modelling of the GIR1 branching ribozyme	EMBO J 27(4): 667-678.
2017	Krogh, N., M. Pietschmann, M. Schmid, T. H. Jensen and H. Nielsen	Lariat capping as a tool to manipulate the 5' end of individual yeast mRNA species in vivo.	Lariat capping ribozyme	Lariat capping as a tool to manipulate the 5' end of mRNA	RNA 23(5): 683-695.
2006	Klein, D. and A. Ferré-D'Amaré	Structural basis of glmS ribozyme activation by glucosamine-6-phosphate.	GlmS ribozyme	Crystal structure	Science (New York, N.Y.) 313(5794): 1752-1756.
2007	Cochrane, J., S. Lipchock and S. Strobel	Structural investigation of the GlmS ribozyme bound to Its catalytic cofactor.	GlmS ribozyme	Crystal structure	Chemistry & biology 14(1): 97-105.
2007	Klein, D., M. Been and A. Ferré-D'Amaré	Essential role of an active-site guanine in glmS ribozyme catalysis.	GlmS ribozyme	Essential role of an active-site guanine G40 in glmS ribozyme catalysis	Journal of the American Chemical Society 129(48): 14858-14859.
2017	Schüller, A., D. Matzner, C. Lünse, V. Wittmann, C. Schumacher, S. Unsleber, H. Brötz-Oesterhelt, C. Mayer, G. Bierbaum and G. Mayer	Activation of the glmS Ribozyme Confers Bacterial Growth Inhibition.	GlmS ribozyme	GlcN6P cofactor play a variety of catalytic roles in glmS ribozyme	Chembiochem : a European journal of chemical biology 18(5): 435-440.
2004	Winkler, W., A. Nahvi, A. Roth, J. Collins and R. Breaker	Control of gene expression by a natural metabolite-responsive ribozyme.	GlmS ribozyme	Discovery,Secondary structure	Nature 428(6980): 281-286.
2006	Soukup, G.	Core requirements for glmS ribozyme self-cleavage reveal a putative pseudoknot structure.	GlmS ribozyme	Pseudoknot structure	Nucleic acids research 34(3): 968-975.
2007	Collins, J., I. Irnov, S. Baker and W. Winkler	Mechanism of mRNA destabilization by the glmS ribozyme.	GlmS ribozyme	Mechanism of mRNA destabilization by the glms ribozyme	Genes & development 21(24): 3356-3368.
2009	Cochrane, J., S. Lipchock, K. Smith and S. Strobel	Structural and chemical basis for glucosamine 6-phosphate binding and activation of the glmS ribozyme.	GlmS ribozyme	Chemical Mechanism	Biochemistry 48(15): 3239-3246.
2010	Ferré-D'Amaré, A.	The glmS ribozyme: use of a small molecule coenzyme by a gene-regulatory RNA.	GlmS ribozyme	Use of a small molecule coenzyme by a gene-regulatory RNA	Quarterly reviews of biophysics 43(4): 423-447.
2010	Klawuhn, K., J. Jansen, J. Souchek, G. Soukup and J. Soukup	Analysis of metal ion dependence in glmS ribozyme self-cleavage and coenzyme binding.	GlmS ribozyme	The role of Mg2+ in active sites	Chembiochem : a European journal of chemical biology 11(18): 2567-2571.
2011	Watson, P. and M. Fedor	The glmS riboswitch integrates signals from activating and inhibitory metabolites in vivo.	GlmS ribozyme	The glmS riboswitch integrates signals from activating and inhibitory metabolites in vivo	Nature structural & molecular biology 18(3): 359-363.
2011	McCown, P., A. Roth and R. Breaker	An expanded collection and refined consensus model of glmS ribozymes.	GlmS ribozyme	An expanded collection and refined consensus model of glmS ribozymes	RNA (New York, N.Y.) 17(4): 728-736.
2012	Viladoms, J. and M. Fedor	The glmS ribozyme cofactor is a general acid-base catalyst.	GlmS ribozyme	The glmS ribozyme cofactor is a general acid-base catalyst	Journal of the American Chemical Society 134(46): 19043-19049.
2013	Lau, M. W. L. and A. R. Ferré-D Amaré	An in vitro evolved glmS ribozyme has the wild-type fold but loses coenzyme dependence.	GlmS ribozyme	An in vitro evolved glmS ribozyme has the wild-type fold but loses coenzyme dependence	Journal of the American Chemical Society 134(46): 19043-19049.
2017	Bingaman, J., S. Zhang, D. Stevens, N. Yennawar, S. Hammes-Schiffer and P. Bevilacqua	The GlcN6P cofactor plays multiple catalytic roles in the glmS ribozyme.	GlmS ribozyme	GlcN6P cofactor play a variety of catalytic roles in glmS ribozyme	Nature chemical biology 13(4): 439-445.
2018	Cruz-Bustos, T., S. Ramakrishnan, C. Cordeiro, M. Ahmed and R. Docampo	A Riboswitch-based Inducible Gene Expression System for Trypanosoma brucei.	GlmS ribozyme	The glmS ribozyme could be used as a tool to study essential genes in T. brucei	The Journal of eukaryotic microbiology 65(3): 412-421.
2020	Andreasson, J., A. Savinov, S. Block and W. Greenleaf	Comprehensive sequence-to-function mapping of cofactor-dependent RNA catalysis in the glmS ribozyme.	GlmS ribozyme	Comprehensive sequence-to-function mapping of cofactor-dependent RNA catalysis in the glmS ribozyme	Nature communications 11(1): 1663.
2021	Traykovska, M., K. Popova and R. Penchovsky	Targeting glmS Ribozyme with Chimeric Antisense Oligonucleotides for Antibacterial Drug Development.	GlmS ribozyme	The glmS ribozyme is a very suitable target for antibacterial drug development with antisense oligonucleotides	ACS synthetic biology 10(11): 3167-3176.
1980	Halbreich, A., P. Pajot, M. Foucher, C. Grandchamp and P. Slonimski	A pathway of cytochrome b mRNA processing in yeast mitochondria: specific splicing steps and an intron-derived circular DNA.	Group II self-splicing intron	"Circular" introns were found to splice out from a mitochondrial gene	Cell 19 (2): 321-9.
1982	Michel, F., A. Jacquier and B. Dujon	Comparison of fungal mitochondrial introns reveals extensive homologies in RNA secondary structure.	Group II self-splicing intron	First secondary structure model by comparative sequence analysis	Biochimie 64 (10): 867-81.
1986	van der Veen, R., A. C. Arnberg, G. van der Horst, L. Bonen, H. F. Tabak and L. A. Grivell	Excised group II introns in yeast mitochondria are lariats and can be formed by self-splicing in vitro.	Group II self-splicing intron	Group II introns form a lariat by self-splicing in vivo	Cell 44 (2): 225-34.
1986	Peebles, C. L., P. S. Perlman, K. L. Mecklenburg, M. L. Petrillo, J. H. Tabor, K. A. Jarrell and H. L. Cheng	A self-splicing RNA excises an intron lariat.	Group II self-splicing intron	Group II introns form a lariat by self-splicing in vivo	Cell 44 (2): 213-23.
1994	Chanfreau, G. and A. Jacquier	Catalytic site components common to both splicing steps of a group II intron.	Group II self-splicing intron	Common catalytic site to both splicing steps.	Cell 178 (3): 612-623.e12.
1995	Peebles, C. L., M. Zhang, P. S. Perlman and J. S. Franzen	Catalytically critical nucleotide in domain 5 of a group II intron.	Group II self-splicing intron	Catalytically critical nucleotide in domain 5	Proc Natl Acad Sci U S A 92 (10): 4422-6.
1995	Boulanger, S. C., S. M. Belcher, U. Schmidt, S. D. Dib-Hajj, T. Schmidt and P. S. Perlman	Studies of point mutants define three essential paired nucleotides in the domain 5 substructure of a group II intron.	Group II self-splicing intron	Three essential paired nucleotides in the domain 5	Mol Cell Biol 15 (8): 4479-88.
1996	Schmidt, U., M. Podar, U. Stahl and P. S. Perlman	Mutations of the two-nucleotide bulge of D5 of a group II intron block splicing in vitro and in vivo: phenotypes and suppressor mutations.	Group II self-splicing intron	Two-nucleotide bulge in D5 are important	RNA 2 (11): 1161-72.
1996	Abramovitz, D. L., R. A. Friedman and A. M. Pyle	Catalytic role of 2'-hydroxyl groups within a group II intron active site.	Group II self-splicing intron	Eight hydroxyl groups in D5 are the key to activity	Science 271 (5254): 1410-3.
1997	Costa, M., E. Deme, A. Jacquier and F. Michel	Multiple tertiary interactions involving domain II of group II self-splicing introns.	Group II self-splicing intron	D2 stabilizes the ribozyme core and controls the location of D6 and branching sites	J Mol Biol 267 (3): 520-36.
2000	Boudvillain, M., A. de Lencastre and A. M. Pyle	A tertiary interaction that links active-site domains to the 5' splice site of a group II intron.	Group II self-splicing intron	Demonstration of tertiary interactions linking the catalytically critical regions of D1 to D5 and anchoring them at the 5' splice site	Nature 406 (6793): 315-8.
2002	Zhang, L. and J. A. Doudna	Structural insights into group II intron catalysis and branch-site selection.	Group II self-splicing intron	Crystal structures of 70-nucleotide RNAs of yeast ai5γ D5 and D6 (3 Å)	Science 295 (5562): 2084-8.
2005	Fedorova, O. and A. M. Pyle	Linking the group II intron catalytic domains: tertiary contacts and structural features of domain 3.	Group II self-splicing intron	D3 is a functional group important for catalytic activity, and the interaction of D3 and D5 promotes catalysis	EMBO J 24 (22): 3906-16.
2005	de Lencastre, A., S. Hamill and A. M. Pyle	A single active-site region for a group II intron.	Group II self-splicing intron	Single active-site region for group II intron catalysis	Nat Struct Mol Biol 12 (7): 626-7.
2007	Fedorova, O. and N. Zingler	Group II introns: structure, folding and splicing mechanism.	Group II self-splicing intron	Review: splicing mechanism	Biol Chem 388 (7): 665-78.
2008	Toor, N., K. S. Keating, S. D. Taylor and A. M. Pyle	Crystal structure of a self-spliced group II intron.	Group II self-splicing intron	The first 3D structure of the Oceanobacillus iheyensis group IIC intron	Science 320 (5872): 77-82.
2010	Pyle, A. M.	The tertiary structure of group II introns: implications for biological function and evolution.	Group II self-splicing intron	Common tertiary structure of the catalytic core	Crit Rev Biochem Mol Biol 45 (3): 215-32.
2012	Marcia, M. and A. M. Pyle	Visualizing group II intron catalysis through the stages of splicing.	Group II self-splicing intron	Crystal structures of a group II intron at different stages of catalysis.	Cell 151 (3): 497-507.
2014	Robart, A. R., R. T. Chan, J. K. Peters, K. R. Rajashankar and N. Toor	Crystal structure of a eukaryotic group II intron lariat.	Group II self-splicing intron	Crystal structure of the intronic lariat form of eukaryotic group IIB	Nature 514 (7521): 193-7.
2016	Qu, G., P. S. Kaushal, J. Wang, H. Shigematsu, C. L. Piazza, R. K. Agrawal, M. Belfort and H. W. Wang	Structure of a group II intron in complex with its reverse transcriptase.	Group II self-splicing intron	Cryo-EM structures of a group Ⅱ intron in complex with its maturase	Nat Struct Mol Biol 23 (6): 549-57.
2017	Zhao, C. and A. M. Pyle	Structural Insights into the Mechanism of Group II Intron Splicing.	Group II self-splicing intron	Review: Structural insights into the splicing mechanism	Trends Biochem Sci 42 (6): 470-482.
2019	Haack, D. B., X. Yan, C. Zhang, J. Hingey, D. Lyumkis, T. S. Baker and N. Toor	Cryo-EM Structures of a Group II Intron Reverse Splicing into DNA.	Group II self-splicing intron	Cryo-EM structures of a group II intron reverse splicing into DNA	Cell 178 (3): 612-623.e12.
2020	Liu, N., X. Dong, C. Hu, J. Zeng, J. Wang, J. Wang, H. W. Wang and M. Belfort	Exon and protein positioning in a pre-catalytic group II intron RNP primed for splicing.	Group II self-splicing intron	Two cryo-EM structures of group II intron RNPs in their pre-catalytic state	Nucleic Acids Res 48 (19): 11185-11198.
2002	Rupert, P., A. Massey, S. Sigurdsson and A. Ferré-D'Amaré	Transition state stabilization by a catalytic RNA.	Hairpin ribozyme	Crystal structure	Science (New York, N.Y.) 298(5597): 1421-1424.
2006	Salter, J., J. Krucinska, S. Alam, V. Grum-Tokars and J. Wedekind	Water in the active site of an all-RNA hairpin ribozyme and effects of Gua8 base variants on the geometry of phosphoryl transfer.	Hairpin ribozyme	Crystal structure	Biochemistry 45(3): 686-700.
1997	Hampel, A. and J. Cowan	A unique mechanism for RNA catalysis: the role of metal cofactors in hairpin ribozyme cleavage.	Hairpin ribozyme	Chemical Mechanism	Chemistry & biology 4(7): 513-517.
1998	Shippy, R., A. Siwkowski and A. Hampel	Mutational analysis of loops 1 and 5 of the hairpin ribozyme.	Hairpin ribozyme	Loops 1 and 5 of the hairpin ribozyme	Biochemistry 37(2): 564-570.
2001	Rupert, P. and A. Ferré-D'Amaré	Crystal structure of a hairpin ribozyme-inhibitor complex with implications for catalysis.	Hairpin ribozyme	Crystal structure	Nature 410(6830): 780-786.
1986	Buzayan, J. M., W. L. Gerlach and G. Bruening	Non-enzymatic cleavage and ligation of RNAs complementary to a plant virus satellite RNA.	Hairpin ribozyme	Discovery	Nature.
1993	Berzal-Herranz, A., S. Joseph, B. Chowrira, S. Butcher and J. Burke	Essential nucleotide sequences and secondary structure elements of the hairpin ribozyme.	Hairpin ribozyme	Sequence/Secondary structure	The EMBO journal 12(6): 2567-2573.
2001	Pinard, R., K. Hampel, J. Heckman, D. Lambert, P. Chan, F. Major and J. Burke	Functional involvement of G8 in the hairpin ribozyme cleavage mechanism.	Hairpin ribozyme	Essential role of an active-site G8 in hairpin ribozyme catalysis	The EMBO journal 20(22): 6434-6442.
2005	Kuzmin, Y., C. Da Costa, J. Cottrell and M. Fedor	Role of an active site adenine in hairpin ribozyme catalysis.	Hairpin ribozyme	Essential role of an active-site A38 in hairpin ribozyme catalysis	Journal of molecular biology 349(5): 989-1010.
2012	Kath-Schorr, S., T. Wilson, N. Li, J. Lu, J. Piccirilli and D. Lilley	General acid-base catalysis mediated by nucleobases in the hairpin ribozyme.	Hairpin ribozyme	Catalytic mechanism	Journal of the American Chemical Society 134(40): 16717-16724.
2019	Hieronymus, R. and S. Müller	Engineering of hairpin ribozyme variants for RNA recombination and splicing.	Hairpin ribozyme	Engineering of hairpin ribozyme variants	Annals of the New York Academy of Sciences 1447(1): 135-143.
2021	Song, E., E. Jiménez, H. Lin, K. Le Vay, R. Krishnamurthy and H. Mutschler	Prebiotically Plausible RNA Activation Compatible with Ribozyme-Catalyzed Ligation.	Hairpin ribozyme	Situ activation of RNA substrates under reaction conditions amenable to catalysis by the hairpin ribozyme	Angewandte Chemie (International ed. in English) 60(6): 2952-2957.
2021	Weinberg, C., V. Olzog, I. Eckert and Z. Weinberg	Identification of over 200-fold more hairpin ribozymes than previously known in diverse circular RNAs.	Hairpin ribozyme	Expand the number of natural hairpin ribozymes	Nucleic acids research 49(11): 6375-6388.
2022	Lee, B., U. Neri, C. Oh, P. Simmonds and E. Koonin	ViroidDB: a database of viroids and viroid-like circular RNAs.	Hairpin ribozyme	ViroidDB: a database of viroids and viroid-like circular RNAs	Nucleic acids research 50: D432-D438.
2022	Hieronymus, R., J. Zhu and S. Müller	RNA self-splicing by engineered hairpin ribozyme variants.	Hairpin ribozyme	Engineering of hairpin ribozyme variants	Nucleic acids research 50(1): 368-377.
1994	Pley, H. W., K. M. Flaherty and D. B. McKay	Three-dimensional structure of a hammerhead ribozyme.	Hammerhead ribozyme	Crystal structure of type III HHR	Nature 372(6501): 68-74.
2008	Chi, Y. I., M. Martick, M. Lares, R. Kim, W. G. Scott and S. H. Kim	Capturing hammerhead ribozyme structures in action by modulating general base catalysis.	Hammerhead ribozyme	Crystal structure	PLoS Biol 6(9): e234.
2014	Schultz, E. P., E. E. Vasquez and W. G. Scott	Structural and catalytic effects of an invariant purine substitution in the hammerhead ribozyme: implications for the mechanism of acid-base catalysis.	Hammerhead ribozyme	Specific base catalysis mechanism	Acta Crystallogr D Biol Crystallogr 70(Pt 9): 2256-2263.
2006	Martick, M. and W. G. Scott	Tertiary contacts distant from the active site prime a ribozyme for catalysis.	Hammerhead ribozyme	Crystal structure of typeⅠ HHR	Cell 126(2): 309-320.
2013	Anderson, M., E. P. Schultz, M. Martick and W. G. Scott	Active-site monovalent cations revealed in a 1.55-Å-resolution hammerhead ribozyme structure.	Hammerhead ribozyme	Crystal structure	J Mol Biol 425(20): 3790-3798.
1986	Prody, G. A., J. T. Bakos, J. M. Buzayan, I. R. Schneider and G. Bruening	Autolytic Processing of Dimeric Plant Virus Satellite RNA.	Hammerhead ribozyme	Discovery	Science 231(4745): 1577-1580.
2015	Weinberg, Z., P. B. Kim, T. H. Chen, S. Li, K. A. Harris, C. E. Lünse and R. R. Breaker	New classes of self-cleaving ribozymes revealed by comparative genomics analysis.	Hammerhead ribozyme	Discover variants of typeⅠHHR	Nat Chem Biol 11(8): 606-610.
2017	Lünse, C. E., Z. Weinberg and R. R. Breaker	Numerous small hammerhead ribozyme variants associated with Penelope-like retrotransposons cleave RNA as dimers.	Hammerhead ribozyme	Some variants form dimers to cleave RNA	RNA Biol 14(11): 1499-1507.
2017	Ren, A., R. Micura and D. J. Patel	Structure-based mechanistic insights into catalysis by small self-cleaving ribozymes.	Hammerhead ribozyme	Catalytic mechanism	Curr Opin Chem Biol 41: 71-83.
2019	Wilson, T. J., Y. Liu, N. S. Li, Q. Dai, J. A. Piccirilli and D. M. J. Lilley	Comparison of the Structures and Mechanisms of the Pistol and Hammerhead Ribozymes.	Hammerhead ribozyme	The structure is similar with the pistol ribozyme	J Am Chem Soc 141(19): 7865-7875.
1986	Hutchins, C. J., P. D. Rathjen, A. C. Forster and R. H. Symons	Self-cleavage of plus and minus RNA transcripts of avocado sunblotch viroid.	Hammerhead ribozyme	Discovery	Nucleic Acids Research 14(9): 3627-3640.
1986	Hutchins, C. J., P. D. Rathjen, A. C. Forster and R. H. Symons	Self-cleavage of plus and minus RNA transcripts of avocado sunblotch viroid.	Hammerhead ribozyme	Secondary structure of type I HHR	Nucleic Acids Research 14(9): 3627-3640.
1987	Forster, A. C. and R. H. Symons	Self-cleavage of plus and minus RNAs of a virusoid and a structural model for the active sites.	Hammerhead ribozyme	Secondary structure of type III HHR	Cell 49(2): 211-220.
1991	Pabón-Peña, L. M., Y. Zhang and L. M. Epstein	Newt satellite 2 transcripts self-cleave by using an extended hammerhead structure.	Hammerhead ribozyme	Internal loops are important	Mol Cell Biol 11(12): 6109-6115.
1998	Murray, J. B., A. A. Seyhan, N. G. Walter, J. M. Burke and W. G. Scott	The hammerhead, hairpin and VS ribozymes are catalytically proficient in monovalent cations alone.	Hammerhead ribozyme	Dense positive charge is critical for catalysis	Chem Biol 5(10): 587-595.
2005	Han, J. and J. M. Burke	Model for general acid-base catalysis by the hammerhead ribozyme: pH-activity relationships of G8 and G12 variants at the putative active site.	Hammerhead ribozyme	G8 and G12 is critical for catalysis	Biochemistry 44(21): 7864-7870.
2005	Han, J. and J. M. Burke	Model for general acid-base catalysis by the hammerhead ribozyme: pH-activity relationships of G8 and G12 variants at the putative active site.	Hammerhead ribozyme	Catalytic mechanism	Biochemistry 44(21): 7864-7870.
2011	Jimenez, R. M., E. Delwart and A. Lupták	Structure-based search reveals hammerhead ribozymes in the human microbiome.	Hammerhead ribozyme	Secondary structure of type II HHR	J Biol Chem 286(10): 7737-7743.
2013	Lee, T. S., K. Y. Wong, G. M. Giambasu and D. M. York	Bridging the gap between theory and experiment to derive a detailed understanding of hammerhead ribozyme catalysis.	Hammerhead ribozyme	Catalytic mechanism	Prog Mol Biol Transl Sci 120: 25-91.
2015	O'Rourke, S. M., W. Estell and W. G. Scott	Minimal Hammerhead Ribozymes with Uncompromised Catalytic Activity.	Hammerhead ribozyme	Trans-Hoogsteen greatly enhances the activity of the minimal hammer ribozyme	J Mol Biol 427(14): 2340-2347.
2017	de la Peña, M. and A. Cervera	Circular RNAs with hammerhead ribozymes encoded in eukaryotic genomes: The enemy at home.	Hammerhead ribozyme	Found on some retrozyme sequences	RNA Biol 14(8): 985-991.
2017	Chen, H., T. J. Giese, B. L. Golden and D. M. York	Divalent Metal Ion Activation of a Guanine General Base in the Hammerhead Ribozyme: Insights from Molecular Simulations.	Hammerhead ribozyme	Mg2+ is critical for catalysis by activating G12	Biochemistry 56(24): 2985-2994.
2018	O'Rourke, S. M. and W. G. Scott	Structural Simplicity and Mechanistic Complexity in the Hammerhead Ribozyme.	Hammerhead ribozyme	Complex mechanism of enhancing activity	Prog Mol Biol Transl Sci 159: 177-202.
2019	You, M., J. L. Litke, R. Wu and S. R. Jaffrey	Detection of Low-Abundance Metabolites in Live Cells Using an RNA Integrator.	Hammerhead ribozyme	Composing RNA-based biosensor	Cell Chem Biol 26(4): 471-481.e473.
2019	Zheng, L., C. Falschlunger, K. Huang, E. Mairhofer, S. Yuan, J. Wang, D. J. Patel, R. Micura and A. Ren	Hatchet ribozyme structure and implications for cleavage mechanism.	Hatchet ribozyme	Crystal structure and cleavage mechanism	Proc Natl Acad Sci U S A 116(22): 10783-10791.
2020	Micura, R. and C. Hobartner	Fundamental studies of functional nucleic acids: aptamers, riboswitches, ribozymes and DNAzymes.	Hatchet ribozyme	Review about functional nucleic acids	Chem Soc Rev 49(20): 7331-7353.
2015	Weinberg, Z., P. B. Kim, T. H. Chen, S. Li, K. A. Harris, C. E. Lunse and R. R. Breaker	New classes of self-cleaving ribozymes revealed by comparative genomics analysis.	Hatchet ribozyme	Discovery, Secondary structure	Nat Chem Biol 11(8): 606-10.
2015	Li, S., C. E. Lunse, K. A. Harris and R. R. Breaker	Biochemical analysis of hatchet self-cleaving ribozymes.	Hatchet ribozyme	Biochemical analysis of hatchet ribozyme	RNA 21(11): 1845-51.
2018	Gasser, C., J. Gebetsberger, M. Gebetsberger and R. Micura	SHAPE probing pictures Mg2+-dependent folding of small self-cleaving ribozymes.	Hatchet ribozyme	SHAPE probing of pre-catalytic folds of hatchet ribozyme	Nucleic Acids Res 46(14): 6983-6995.
1997	Kolk, M. H.	The structure of the isolated, central hairpin of the HDV antigenomic ribozyme: novel structural features and similarity of the loop in the ribozyme and free in solution.	HDV ribozyme	NMR structure of the isolated central hairpin（Stem Loop Ⅲ)	The EMBO Journal 16(12): 3685-3692.
1998	Ferré-D'Amaré, A. R., K. Zhou and J. A. Doudna	Crystal structure of a hepatitis delta virus ribozyme.	HDV ribozyme	Crystal structure	Nature 395(6702): 567-574.
2004	Ke, A., K. Zhou, F. Ding, J. H. Cate and J. A. Doudna	A conformational switch controls hepatitis delta virus ribozyme catalysis.	HDV ribozyme	Precursor structures	Nature 429(6988): 201-205.
2010	Chen, J. H., R. Yajima, D. M. Chadalavada, E. Chase, P. C. Bevilacqua and B. L. Golden	A 1.9 A crystal structure of the HDV ribozyme precleavage suggests both Lewis acid and general acid mechanisms contribute to phosphodiester cleavage.	HDV ribozyme	Precleavage structures	Biochemistry 49(31): 6508-6518.
1991	Rosenstein, S. P. and M. D. Been	Evidence that genomic and antigenomic RNA self-cleaving elements from hepatitis delta virus have similar secondary structures.	HDV ribozyme	Pseudoknot-like secondary structure	Nucleic Acids Research 19(19): 5409-5416.
2019	Lilley, D. M. J.	Classification of the nucleolytic ribozymes based upon catalytic mechanism.	HDV ribozyme	Review	F1000Res 8.
1988	Kuo, M. Y., L. Sharmeen, G. Dinter-Gottlieb and J. Taylor	Characterization of self-cleaving RNA sequences on the genome and antigenome of human hepatitis delta virus.	HDV ribozyme	Discovery	J Virol 62(12): 4439-4444.
1988	Sharmeen, L., M. Y. Kuo, G. Dinter-Gottlieb and J. Taylor	Antigenomic RNA of human hepatitis delta virus can undergo self-cleavage.	HDV ribozyme	Discovery	J Virol 62(8): 2674-2679.
1989	Wu, H. N., Y. J. Lin, F. P. Lin, S. Makino, M. F. Chang and M. M. Lai	Human hepatitis delta virus RNA subfragments contain an autocleavage activity.	HDV ribozyme	Discovery	Proceedings of the National Academy of Sciences 86(6): 1831-1835.
1990	Perrotta, A. T. and M. D. Been	The self-cleaving domain from the genomic RNA of hepatitis delta virus: sequence requirements and the effects of denaturant.	HDV ribozyme	84 nucleotides are required for rapid and efficient self-cleavage	Nucleic Acids Res 18(23): 6821-6827.
1991	Perrotta, A. T. and M. D. Been	A pseudoknot-like structure required for efficient self-cleavage of hepatitis delta virus RNA.	HDV ribozyme	Pseudoknot-like secondary structure	Nature 350(6317): 434-436.
1992	Been, M. D., A. T. Perrotta and S. P. Rosenstein	Secondary structure of the self-cleaving RNA of hepatitis delta virus: applications to catalytic RNA design.	HDV ribozyme	The P4 duplex can reduce the minimum size to about 65 nucleotides	Biochemistry 31(47): 11843-11852.
1993	Suh, Y. A., P. K. Kumar, K. Taira and S. Nishikawa	Self-cleavage activity of the genomic HDV ribozyme in the presence of various divalent metal ions.	HDV ribozyme	Nonspecifific divalent cations are required for self-cleavage	Nucleic Acids Res 21(14): 3277-3280.
1996	Ferre-D'Amare, A. R. and J. A. Doudna	Use of cis- and trans-ribozymes to remove 5' and 3' heterogeneities from milligrams of in vitro transcribed RNA.	HDV ribozyme	Use of cis-delta ribozyme generated 3′homogeneous RNA ends	Nucleic Acids Res 24(5): 977-978
2000	Nakano, S., D. M. Chadalavada and P. C. Bevilacqua	General acid-base catalysis in the mechanism of a hepatitis delta virus ribozyme.	HDV ribozyme	C75 acts as the general acid and ribozyme-bound hydrated metal hydroxide as the general base	Science 287(5457): 1493-1497.
2005	Das, S. R. and J. A. Piccirilli	General acid catalysis by the hepatitis delta virus ribozyme.	HDV ribozyme	It is prooved that C75 acts as the general acid	Nat Chem Biol 1(1): 45-52.
2015	Weinberg, Z., P. B. Kim, T. H. Chen, S. Li, K. A. Harris, C. E. Lünse and R. R. Breaker	New classes of self-cleaving ribozymes revealed by comparative genomics analysis.	HDV ribozyme	The HDV ribozyme variants were discovered	Nature Chemical Biology 11(8): 606-610.
2015	Koo, S. C., J. Lu, N. S. Li, E. Leung, S. R. Das, M. E. Harris and J. A. Piccirilli	Transition State Features in the Hepatitis Delta Virus Ribozyme Reaction Revealed by Atomic Perturbations.	HDV ribozyme	Transition state features	J Am Chem Soc 137(28): 8973-8982.
2016	Lee, T. S., B. K. Radak, M. E. Harris and D. M. York	A Two-Metal-Ion-Mediated Conformational Switching Pathway for HDV Ribozyme Activation.	HDV ribozyme	Dynamic reaction mechanism model with two Mg2+ ions	ACS Catal 6(3): 1853-1869.
2019	Yamagami, R., M. Kayedkhordeh, D. H. Mathews and P. C. Bevilacqua	Design of highly active double-pseudoknotted ribozymes: a combined computational and experimental study.	HDV ribozyme	Double-pseudoknot HDV can self-cleavge with the same mechanism as the WT ribozyme	Nucleic Acids Res 47(1): 29-42.
2015	Weinberg, Z., P. B. Kim, T. H. Chen, S. Li, K. A. Harris, C. E. Lunse and R. R. Breaker	New classes of self-cleaving ribozymes revealed by comparative genomics analysis.	HDV ribozyme variants	HDV ribozyme variants in bacterial metagenomes and fungal genomes	Nat Chem Biol 11 (8): 606-10
2017	Li, S. and R. R. Breaker	Identification of 15 candidate structured noncoding RNA motifs in fungi by comparative genomics.	HDV variants	More HDV ribozyme variants in fungi	BMC Genomics 18 (1): 785.
2009	Webb, C. H., N. J. Riccitelli, D. J. Ruminski and A. Luptak	Widespread occurrence of self-cleaving ribozymes.	HDV-like ribozymes	HDV-like ribozymes in other species	Science 326 (5955): 953.
2011	Webb, C. H. and A. Luptak	HDV-like self-cleaving ribozymes.	HDV-like self-cleaving ribozymes	A review of HDV-like self-cleaving ribozymes	RNA Biol 8 (5): 719-27.
2021	Chen, Y., F. Qi, F. Gao, H. Cao, D. Xu, K. Salehi-Ashtiani and P. Kapranov	Hovlinc is a recently evolved class of ribozyme found in human lncRNA.	Hovlinc ribozyme	Discovery of Hovlinc ribozyme and its secondary structure	Nature Chemical Biology 17 (5): 601-607.
2011	Sanchez-Luque, F. J., M. C. Lopez, F. Macias, C. Alonso and M. C. Thomas	Identification of an hepatitis delta virus-like ribozyme at the mRNA 5'-end of the L1Tc retrotransposon from Trypanosoma cruzi.	L1Tc ribozyme(L1TcRz)	A HDV-like ribozyme in L1Tc mRNA	Nucleic Acids Res 39 (18): 8065-77.
2006	Salehi-Ashtiani, K., A. Luptak, A. Litovchick and J. W. Szostak	A genomewide search for ribozymes reveals an HDV-like sequence in the human CPEB3 gene.	LINE1 ribozyme	Discovery	Science 313(5794): 1788-1792.
2016	Ren, A., Vusurovic, N., Gebetsberger, J., Gao, P., Juen, M., Kreutz, C., Micura, R. & Patel, D. J.	Pistol ribozyme adopts a pseudoknot fold facilitating site-specific in-line cleavage.	Pistol ribozyme	The pseudoknot fold facilitating sitespecific in-line cleavage	Nature Chemical Biology, 12, 702-8.
2017	Nguyen, L. A., Wang, J. & Steitz, T. A.	Crystal structure of Pistol, a class of self-cleaving ribozyme.	Pistol ribozyme	Crystal structure of Pistol shows an evolutionarily conserved cleavage mechanism that is like other self-cleaving ribozymes	Proc Natl Acad Sci U S A, 114, 1021-6.
2019	Wilson, T. J., Y. Liu, N. S. Li, Q. Dai, J. A. Piccirilli and D. Lilley	Comparison of the Structures and Mechanisms of the Pistol and Hammerhead Ribozymes.	Pistol ribozyme	Comparison of the Structures and Mechanisms of the Pistol and Hammerhead Ribozymes	J Am Chem Soc 141(19): 7865-7875.
2020	Teplova, M., Falschlunger, C., Krasheninina, O., Egger, M., Ren, A., Patel, D. J. & Micura, R.	Crucial Roles of Two Hydrated Mg2+ Ions in Reaction Catalysis of the Pistol Ribozyme.	Pistol ribozyme	Crucial Roles of Two Hydrated Mg2+ Ions in Reaction Catalysis	Angew Chem Int Ed Engl, 59, 2837-43.
2017	Kobori, S., K. Takahashi and Y. Yokobayashi	Deep Sequencing Analysis of Aptazyme Variants Based on a Pistol Ribozyme.	Pistol ribozyme	Deep Sequencing Analysis of Aptazyme Variants Based on Pistol Ribozyme	ACS Synth Biol 6(7): 1283-1288.
2020	Micura, R. and C. Hobartner	Fundamental studies of functional nucleic acids: aptamers, riboswitches, ribozymes and DNAzymes.	Pistol ribozyme	Review about functional nucleic acids	Chem Soc Rev 49(20): 7331-7353.
2021	Mustafina, K., Y. Nomura, R. Rotrattanadumrong and Y. Yokobayashi	Circularly-Permuted Pistol Ribozyme: A Synthetic Ribozyme Scaffold for Mammalian Riboswitches.	Pistol ribozyme	Pistol ribozyme used for Mammalian Riboswitches	ACS Synth Biol 10(8): 2040-2048.
2015	Weinberg, Z., Kim, P. B., Chen, T. H., Li, S., Harris, K. A., Lunse, C. E. & Breaker, R. R.	New classes of self-cleaving ribozymes revealed by comparative genomics analysis.	Pistol ribozyme	Discovery, Secondary structure	Nature Chemical Biology, 11, 606-10.
2015	Harris, K. A., C. E. Lunse, S. Li, K. I. Brewer and R. R. Breaker	Biochemical analysis of pistol self-cleaving ribozymes.	Pistol ribozyme	Biochemical analysis of pistol ribozyme	RNA 21(11): 1852-8.
2017	Neuner, S., C. Falschlunger, E. Fuchs, M. Himmelstoss, A. Ren, D. J. Patel and R. Micura	Atom-Specific Mutagenesis Reveals Structural and Catalytic Roles for an Active-Site Adenosine and Hydrated Mg(2+) in Pistol Ribozymes.	Pistol ribozyme	Structural and Catalytic Roles for an Active-Site Adenosine and Hydrated Mg(2+) in Pistol Ribozymes	Angew Chem Int Ed Engl 56(50): 15954-15958.
2020	Joseph, N. N., R. N. Roy and T. A. Steitz	Molecular dynamics analysis of Mg(2+) -dependent cleavage of a pistol ribozyme reveals a fail-safe secondary ion for catalysis.	Pistol ribozyme	Mg2+ -dependent cleavage of a pistol ribozyme reveals a fail-safe secondary ion for catalysis	J Comput Chem 41(14): 1345-1352.
2021	Lihanova, Y. and C. E. Weinberg	Biochemical analysis of cleavage and ligation activities of the pistol ribozyme from Paenibacillus polymyxa.	Pistol ribozyme	Biochemical analysis of cleavage and ligation activities of the pistol ribozyme from Paenibacillus polymyxa	RNA Biol 18(11): 1858-1866.
2022	Ekesan, S. and D. M. York	Who stole the proton? Suspect general base guanine found with a smoking gun in the pistol ribozyme.	Pistol ribozyme	new classical and combined quantum mechanical/molecular mechanical simulation of pistol ribozyme	Org Biomol Chem.
2010	Eickbush, D. G. and T. H. Eickbush	R2 retrotransposons encode a self-cleaving ribozyme for processing from an rRNA cotranscript.	R2 ribozyme	A HDV-like ribozyme encoded by R2 retrotransposons	Mol Cell Biol 30 (13): 3142-50.
2011	Ruminski, D. J., C. T. Webb, N. J. Riccitelli and A. Luptak	Processing and translation initiation of non-long terminal repeat retrotransposons by hepatitis delta virus (HDV)-like self-cleaving ribozymes.	RT-associated ribozymes	More retrotransposons encode HDV-like ribozymes	J Biol Chem 286 (48): 41286-41295.
2014	Liu, Y., T. J. Wilson, S. A. McPhee and D. M. Lilley	Crystal structure and mechanistic investigation of the twister ribozyme.	twister ribozyme	Crystal structure of P1-type	Nat Chem Biol 10(9): 739-44.
2014	Eiler, D., J. Wang and T. A. Steitz	Structural basis for the fast self-cleavage reaction catalyzed by the twister ribozyme.	twister ribozyme	Crystal structure of P3-type	Proc Natl Acad Sci U S A 111(36): 13028-33.
2014	Ren, A., M. Kosutic, K. R. Rajashankar, M. Frener, T. Santner, E. Westhof, R. Micura and D. J. Patel	In-line alignment and Mg(2)(+) coordination at the cleavage site of the env22 twister ribozyme.	twister ribozyme	Crystal structure of P1-type	Nat Commun 5: 5534.
2015	Kosutic, M., S. Neuner, A. Ren, S. Flur, C. Wunderlich, E. Mairhofer, N. Vusurovic, J. Seikowski, K. Breuker, C. Hobartner, D. J. Patel, C. Kreutz and R. Micura	A Mini-Twister Variant and Impact of Residues/Cations on the Phosphodiester Cleavage of this Ribozyme Class.	twister ribozyme	Catalytic mechanism of Mini-Twister Variant	Angew Chem Int Ed Engl 54(50): 15128-15133.
2016	Wilson, T. J., Y. Liu, C. Domnick, S. Kath-Schorr and D. M. Lilley	The Novel Chemical Mechanism of the Twister Ribozyme.	twister ribozyme	Novel chemical Mechanism	J Am Chem Soc 138(19): 6151-62.
2016	Kobori, S. and Y. Yokobayashi	High-Throughput Mutational Analysis of a Twister Ribozyme.	twister ribozyme	High-Throughput Mutational Analysis of a Twister Ribozyme	Angew Chem Int Ed Engl 55(35): 10354-7.
2017	Vusurovic, N., Altman, R. B., Terry, D. S., Micura, R. & Blanchard, S. C.	Pseudoknot Formation Seeds the Twister Ribozyme Cleavage Reaction Coordinate.	twister ribozyme	The role of pseudokno	J Am Chem Soc 139 (24): 8186-8193.
2017	Panja, S., B. Hua, D. Zegarra, T. Ha and S. A. Woodson	Metals induce transient folding and activation of the twister ribozyme.	twister ribozyme	Metals induce transient folding and activation of the twister ribozyme	Nat Chem Biol 13(10): 1109-1114.
2018	Messina, K. J. and P. C. Bevilacqua	Cellular Small Molecules Contribute to Twister Ribozyme Catalysis.	twister ribozyme	Cellular Small Molecules Contribute to Twister Ribozyme Catalysis	J Am Chem Soc 140(33): 10578-10582.
2019	Gaines, C. S., T. J. Giese and D. M. York	Cleaning Up Mechanistic Debris Generated by Twister Ribozymes Using Computational RNA Enzymology.	twister ribozyme	Cleaning Up Mechanistic Debris Generated by Twister Ribozymes Using Computational RNA Enzymology	ACS Catal 9(7): 5803-5815.
2019	Lilley, D.	Classification of the nucleolytic ribozymes based upon catalytic mechanism.	twister ribozyme	Classification of the nucleolytic ribozymes based upon catalytic mechanism	F1000Res 8.
2019	Litke, J. L. and S. R. Jaffrey	Highly efficient expression of circular RNA aptamers in cells using autocatalytic transcripts.	twister ribozyme	Application for highly efficient express circular RNA aptamers	Nat Biotechnol 37(6): 667-675.
2020	Korman, A., H. Sun, B. Hua, H. Yang, J. N. Capilato, R. Paul, S. Panja, T. Ha, M. M. Greenberg and S. A. Woodson	Light-controlled twister ribozyme with single-molecule detection resolves RNA function in time and space.	twister ribozyme	Application for RNA function detection	Proc Natl Acad Sci U S A 117(22): 12080-12086.
2014	Roth, A., Z. Weinberg, A. G. Chen, P. B. Kim, T. D. Ames and R. R. Breaker	A widespread self-cleaving ribozyme class is revealed by bioinformatics.	twister ribozyme	Discovery, Secondary structure	Nat Chem Biol 10(1): 56-60.
2016	Felletti, M., J. Stifel, L. A. Wurmthaler, S. Geiger and J. S. Hartig	Twister ribozymes as highly versatile expression platforms for artificial riboswitches.	twister ribozyme	Application：Twister ribozymes as highly versatile expression platforms for artificial riboswitches	Nat Commun 7: 12834.
2016	Gaines, C. S. and D. M. York	Ribozyme Catalysis with a Twist: Active State of the Twister Ribozyme in Solution Predicted from Molecular Simulation.	twister ribozyme	Active State of the Twister Ribozyme in Solution Predicted from Molecular Simulation	J Am Chem Soc 138(9): 3058-65.
2017	Gebetsberger, J. & Micura, R.	Unwinding the twister ribozyme: from structure to mechanism.	twister ribozyme	Chemical Mechanism	Wiley Interdiscip Rev RNA 8 (3).
2017	Breaker, R. R.	Mechanistic Debris Generated by Twister Ribozymes.	twister ribozyme	Mechanistic Debris Generated by Twister Ribozymes	ACS Chem Biol 12(4): 886-891.
2021	Liu, G., H. Jiang, W. Sun, J. Zhang, D. Chen and A. Murchie	The function of twister ribozyme variants in non-LTR retrotransposition in Schistosoma mansoni.	twister ribozyme	The function of twister ribozyme variants in non-LTR retrotransposition	Nucleic Acids Res 49(18): 10573-10588.
2017	Liu, Y., T. J. Wilson and D. Lilley	The structure of a nucleolytic ribozyme that employs a catalytic metal ion.	twister-sister ribozyme	Three-way junctional pre-catalytic structure	Nat Chem Biol 13(5): 508-513.
2017	Zheng, L., E. Mairhofer, M. Teplova, Y. Zhang, J. Ma, D. J. Patel, R. Micura and A. Ren	Structure-based insights into self-cleavage by a four-way junctional twister-sister ribozyme.	twister-sister ribozyme	Four-way junctional pre-catalytic structure	Nat Commun 8(1): 1180.
2017	Gaines, C. S. and D. M. York	Model for the Functional Active State of the TS Ribozyme from Molecular Simulation.	twister-sister ribozyme	Model for the Functional Active State of the TS Ribozyme	Angew Chem Int Ed Engl 56(43): 13392-13395.
2019	Lilley, D.	Classification of the nucleolytic ribozymes based upon catalytic mechanism.	twister-sister ribozyme	Classification of the nucleolytic ribozymes based upon catalytic mechanism	F1000Res 8.
2019	You, M., J. L. Litke, R. Wu and S. R. Jaffrey	Detection of Low-Abundance Metabolites in Live Cells Using an RNA Integrator.	twister-sister ribozyme	Application:twister sister ribozyme is used to detect Low-Abundance Mrtabolites	Cell Chem Biol 26(4): 471-481.e3.
2020	Micura, R. and C. Hobartner	Fundamental studies of functional nucleic acids: aptamers, riboswitches, ribozymes and DNAzymes.	twister-sister ribozyme	Review about functional nucleic acids	Chem Soc Rev 49(20): 7331-7353.
2015	Weinberg, Z., P. B. Kim, T. H. Chen, S. Li, K. A. Harris, C. E. Lunse and R. R. Breaker	New classes of self-cleaving ribozymes revealed by comparative genomics analysis.	twister-sister ribozyme	Discovery, Secondary structure	Nat Chem Biol 11(8): 606-10.
2017	Ren, A., R. Micura and D. J. Patel	Structure-based mechanistic insights into catalysis by small self-cleaving ribozymes.	twister-sister ribozyme	Structure-based mechanistic	Curr Opin Chem Biol 41: 71-83.
2008	Kolev, N. G., E. I. Hartland and P. W. Huber	A manganese-dependent ribozyme in the 3'-untranslated region of Xenopus Vg1 mRNA.	Vg1 ribozyme	Discovery that manganese-dependent ribozyme occurs naturally in the 3'-UTR of Vg1 and beta-actin mRNAs	Nucleic Acids Res 36(17): 5530-5539.
1990	Saville, B. J. and R. A. Collins	A site-specific self-cleavage reaction performed by a novel RNA in neurospora mitochondria.	VS ribozyme	discovery	Cell 61(4): 685-696.
1995	Beattie, T. L., J. E. Olive and R. A. Collins	A secondary-structure model for the self-cleaving region of Neurospora VS RNA.	VS ribozyme	secondary structure	Proc Natl Acad Sci U S A 92(10): 4686-4690.
2001	D.A. Lafontaine, D.G. Norman and D.M.J. Lilley	Structure, folding and activity of the VS ribozyme : Importance of the 2-3-6 helical junction	VS ribozyme	Importance of the 2-3-6 helical junction	EMBO J. 20 1415-1424
2001	Lafontaine, D. A., T. J. Wilson, D. G. Norman and D. M. Lilley	The A730 loop is an important component of the active site of the VS ribozyme.	VS ribozyme	A730 loop is important	J Mol Biol 312(4): 663-674.
2001	Flinders, J. and T. Dieckmann	A pH controlled conformational switch in the cleavage site of the VS ribozyme substrate RNA.	VS ribozyme	NMR structure of the isolated substrate helix	J Mol Biol 308(4): 665-679.
2002	D.A. Lafontaine, D.G. Norman and D. M.J. Lilley	The global structure of the VS ribozyme.	VS ribozyme	The global structure of the VS ribozyme	EMBO J. 21, 2461-2471
2002	Lafontaine, D. A., T. J. Wilson, Z.-Y. Zhao and D. M. J. Lilley	Functional Group Requirements in the Probable Active Site of the VS Ribozyme.	VS ribozyme	A756 is critical for catalysis	Journal of Molecular Biology 323(1): 23-34.
2005	Campbell, D. O. and P. Legault	Nuclear magnetic resonance structure of the Varkud satellite ribozyme stem-loop V RNA and magnesium-ion binding from chemical-shift mapping.	VS ribozyme	NMR structure of SL5	Biochemistry 44(11): 4157-4170.
2007	Wilson, T. J., A. C. McLeod and D. M. Lilley	A guanine nucleobase important for catalysis by the VS ribozyme.	VS ribozyme	G638 is critical for catalysis	EMBO J 26(10): 2489-2500.
2008	Lipfert, J., J. Ouellet, D. G. Norman, S. Doniach and D. M. Lilley	The complete VS ribozyme in solution studied by small-angle X-ray scattering.	VS ribozyme	SAXS-deriverd structure	Structure 16(9): 1357-1367.
2009	J. Ouellet, M. Byrne and D. M. J. Lilley	Formation of an active site in trans by interaction of two complete Varkud Satellite ribozymes	VS ribozyme	The soixante-neuf experiment	RNA 15, 1822-1826
2010	Wilson, T. J., N. S. Li, J. Lu, J. K. Frederiksen, J. A. Piccirilli and D. M. Lilley	Nucleobase-mediated general acid-base catalysis in the Varkud satellite ribozyme.	VS ribozyme	catalytic mechanism	Proc Natl Acad Sci U S A 107(26): 11751-11756.
2011	T. J. Wilson and D. M. J. Lilley.	Do the hairpin and VS ribozymes share a common catalytic mechanism based on general acid-base catalysis ? A critical assessment of available experimental data.	VS ribozyme	Detailed discussion of the chemical mechanism	RNA 17, 213-221
2011	Desjardins, G., E. Bonneau, N. Girard, J. Boisbouvier and P. Legault	NMR structure of the A730 loop of the Neurospora VS ribozyme: insights into the formation of the active site.	VS ribozyme	NMR structure of A730 loop	Nucleic Acids Res 39(10): 4427-4437.
2014	Bonneau, E. and P. Legault	Nuclear magnetic resonance structure of the III-IV-V three-way junction from the Varkud satellite ribozyme and identification of magnesium-binding sites using paramagnetic relaxation enhancement.	VS ribozyme	NMR structure of the III-IV-V three-way junction	Biochemistry 53(39): 6264-6275.
2015	Bonneau, E., N. Girard, S. Lemieux and P. Legault	The NMR structure of the II-III-VI three-way junction from the Neurospora VS ribozyme reveals a critical tertiary interaction and provides new insights into the global ribozyme structure.	VS ribozyme	NMR structure of the II-III-VI three-way junction	RNA 21(9): 1621-1632.
2015	Suslov, N. B., S. DasGupta, H. Huang, J. R. Fuller, D. M. Lilley, P. A. Rice and J. A. Piccirilli	Crystal structure of the Varkud satellite ribozyme.	VS ribozyme	Crystal structure	Nat Chem Biol 11(11): 840-846.
2017	DasGupta, S., N. B. Suslov and J. A. Piccirilli	Structural Basis for Substrate Helix Remodeling and Cleavage Loop Activation in the Varkud Satellite Ribozyme.	VS ribozyme	Crystal structure	J Am Chem Soc 139(28): 9591-9597.
2020	Ganguly, A., B. P. Weissman, T. J. Giese, N. S. Li, S. Hoshika, S. Rao, S. A. Benner, J. A. Piccirilli and D. M. York	Confluence of theory and experiment reveals the catalytic mechanism of the Varkud satellite ribozyme.	VS ribozyme	Additional experiments to summarize the structure and function of VS ribozyme	Nat Chem 12(2): 193-201.
1977	Chow, L. T., R. E. Gelinas, T. R. Broker and R. J. Roberts	An amazing sequence arrangement at the 5′ ends of adenovirus 2 messenger RNA.	Spliceosome	Splicing phenomenon found	Cell 12(1): 1-8.
1983	Mount, S. M., I. Pettersson, M. Hinterberger, A. Karmas and J. A. Steitz	The U1 small nuclear RNA-protein complex selectively binds a 5' splice site in vitro.	Spliceosome	First isolation of spliceosome subunits	Cell 33(2): 509-518.
1985	Frendewey, D. and W. Keller	Stepwise assembly of a pre-mRNA splicing complex requires U-snRNPs and specific intron sequences.	Spliceosome	In vitro splicing experiment	Cell 42(1): 355-367.
1985	Grabowski, P., S. Seiler and P. Sharp	A multicomponent complex is involved in the splicing of messenger RNA precursors.	Spliceosome	In vitro splicing experiment	Cell 42(1): 345-353.
1992	Madhani, H. D. and C. Guthrie	A novel base-pairing interaction between U2 and U6 snRNAs suggests a mechanism for the catalytic activation of the spliceosome.	Spliceosome	Demonstrate a conserved base-pairing interaction between the U6 and U2 snRNAs that is mutually exclusive with the U4-U6 interaction	Cell 71(5): 803-817.
1993	Steitz, T. A. and J. A. Steitz	A general two-metal-ion mechanism for catalytic RNA.	Spliceosome	Proposed that the two phosphotransesterifications of splicing are catalyzed by a two-metal mechanism	Proc Natl Acad Sci U S A 90(14): 6498-6502.
1997	Sontheimer, E. J., S. Sun and J. A. Piccirilli	Metal ion catalysis during splicing of premessenger RNA.	Spliceosome	Divalent metals stabilize the leaving group during each step of splicing	Nature 388(6644): 801-805.
2000	Yean, S. L., G. Wuenschell, J. Termini and R. J. Lin	Metal-ion coordination by U6 small nuclear RNA contributes to catalysis in the spliceosome.	Spliceosome	Metal-ion coordination by U6 small nuclear RNA contributes to catalysis in the spliceosome	Nature 408(6814): 881-884.
2001	Valadkhan, S. and J. L. Manley	Splicing-related catalysis by protein-free snRNAs.	Spliceosome	U2 and U6 can base-pair and fold in vitro into a structure that catalyzes reactions similar to the two steps of pre-mRNA splicing	Nature 413(6857): 701-707.
2009	Mefford, M. A. and J. P. Staley	Evidence that U2/U6 helix I promotes both catalytic steps of pre-mRNA splicing and rearranges in between these steps.	Spliceosome	U2/U6 helix I promotes both catalytic steps of pre-mRNA splicing and rearranges in between these steps	RNA 15(7): 1386-1397.
2013	Galej, W. P., C. Oubridge, A. J. Newman and K. Nagai	Crystal structure of Prp8 reveals active site cavity of the spliceosome.	Spliceosome	provides crucial insights into the architecture of the spliceosome active site, and reinforces the notion that nuclear pre-mRNA splicing and group II intron splicing have a common origin.	Nature 493(7434): 638-643.
2013	Fica, S. M., N. Tuttle, T. Novak, N. S. Li, J. Lu, P. Koodathingal, Q. Dai, J. P. Staley and J. A. Piccirilli	RNA catalyses nuclear pre-mRNA splicing.	Spliceosome	Demonstrate that RNA mediates catalysis within the spliceosome.	Nature 503(7475): 229-234.
2015	Yan, C., J. Hang, R. Wan, M. Huang, C. C. Wong and Y. Shi	Structure of a yeast spliceosome at 3.6-angstrom resolution.	Spliceosome	S.p ILS, 3.6 Å The first atomic structure of the intact spliceosome	Science 349(6253): 1182-1191.
2016	Galej, W. P., M. E. Wilkinson, S. M. Fica, C. Oubridge, A. J. Newman and K. Nagai	Cryo-EM structure of the spliceosome immediately after branching.	Spliceosome	The resolution of tri-snRNP, a complex during splice assembly, was increased to 5.9 angstroms	Nature 537(7619): 197-201.
2016	Wan, R., C. Yan, R. Bai, G. Huang and Y. Shi	Structure of a yeast catalytic step I spliceosome at 3.4 A resolution.	Spliceosome	S.c C, 3.4 Å Active site after branching	Science 353(6302): 895-904.
2016	Wan, R., C. Yan, R. Bai, L. Wang, M. Huang, C. C. Wong and Y. Shi	The 3.8 A structure of the U4/U6.U5 tri-snRNP: Insights into spliceosome assembly and catalysis.	Spliceosome	U4/U6.U5 tri-snRNP，3.8Å	Science 351(6272): 466-475.
2016	Yan, C., R. Wan, R. Bai, G. Huang and Y. Shi	Structure of a yeast activated spliceosome at 3.5 A resolution.	Spliceosome	B act , 3.5 Å Catalytic center is formed	Science 353(6302): 904-911.
2017	Yan, C., R. Wan, R. Bai, G. Huang and Y. Shi	Structure of a yeast step II catalytically activated spliceosome.	Spliceosome	S.c C*, 4.0 Å	Science 355(6321): 149-155.
2017	Fica, S. M., C. Oubridge, W. P. Galej, M. E. Wilkinson, X. C. Bai, A. J. Newman and K. Nagai	Structure of a spliceosome remodelled for exon ligation.	Spliceosome	S.c C*, 3.8 Å	Nature 542(7641): 377-380.
2017	Plaschka, C., P. C. Lin and K. Nagai	Structure of a pre-catalytic spliceosome.	Spliceosome	S.c B, 7.2 (3.7) Å	Nature 546(7660): 617-621.
2017	Wan, R., C. Yan, R. Bai, J. Lei and Y. Shi	Structure of an Intron Lariat Spliceosome from Saccharomyces cerevisiae.	Spliceosome	S.c ILS, 3.5 Å	Cell 171(1): 120-132 e112.
2017	Liu, S., X. Li, L. Zhang, J. Jiang, R. C. Hill, Y. Cui, K. C. Hansen, Z. H. Zhou and R. Zhao	Structure of the yeast spliceosomal postcatalytic P complex.	Spliceosome	S.c P, 3.3 Å	Science 358(6368): 1278-1283.
2017	Bai, R., C. Yan, R. Wan, J. Lei and Y. Shi	Structure of the Post-catalytic Spliceosome from Saccharomyces cerevisiae.	Spliceosome	S.c P, 3.6 Å	Cell 171(7): 1589-1598 e1588.
2017	Bertram, K., D. E. Agafonov, O. Dybkov, D. Haselbach, M. N. Leelaram, C. L. Will, H. Urlaub, B. Kastner, R. Luhrmann and H. Stark	Cryo-EM Structure of a Pre-catalytic Human Spliceosome Primed for Activation.	Spliceosome	C*, 5.9 Å	Cell 170(4): 701-713 e711.
2017	Zhang, X., C. Yan, J. Hang, L. I. Finci, J. Lei and Y. Shi	An Atomic Structure of the Human Spliceosome.	Spliceosome	C*, 3.8 Å The first atomic model of human spliceosom	Cell 169(5): 918-929 e914.
2017	Bertram, K., D. E. Agafonov, W. T. Liu, O. Dybkov, C. L. Will, K. Hartmuth, H. Urlaub, B. Kastner, H. Stark and R. Luhrmann	Cryo-EM structure of a human spliceosome activated for step 2 of splicing.	Spliceosome	B, 9.9 (4.5) Å	Nature 542(7641): 318-323.
2018	Bai, R., R. Wan, C. Yan, J. Lei and Y. Shi	Structures of the fully assembled Saccharomyces cerevisiae spliceosome before activation.	Spliceosome	S.c pre–B, 3.3–4.6 Å S.c B, 3.9 Å	Science 360(6396): 1423-1429.
2018	Plaschka, C., P. C. Lin, C. Charenton and K. Nagai	Prespliceosome structure provides insights into spliceosome assembly and regulation.	Spliceosome	S.c A, 4.9 (4.0) Å	Nature 559(7714): 419-422.
2018	Zhan, X., C. Yan, X. Zhang, J. Lei and Y. Shi	Structure of a human catalytic step I spliceosome.	Spliceosome	C, 4.1 Å	Science 359(6375): 537-545.
2018	Haselbach, D., I. Komarov, D. E. Agafonov, K. Hartmuth, B. Graf, O. Dybkov, H. Urlaub, B. Kastner, R. Luhrmann and H. Stark	Structure and Conformational Dynamics of the Human Spliceosomal B(act) Complex.	Spliceosome	Bact , 3.4 Å (core)	Cell 172(3): 454-464 e411.
2018	Zhan, X., C. Yan, X. Zhang, J. Lei and Y. Shi	Structures of the human pre-catalytic spliceosome and its precursor spliceosome.	Spliceosome	pre–B (5.7 Å) and B (3.8 Å)	Cell Res 28(12): 1129-1140.
2019	Wan, R., R. Bai, C. Yan, J. Lei and Y. Shi	Structures of the Catalytically Activated Yeast Spliceosome Reveal the Mechanism of Branching.	Spliceosome	S.c B*, 2.9–3.8 Å Four distinct structures on two different substrates	Cell 177(2): 339-351 e313.
2019	Fica, S. M., C. Oubridge, M. E. Wilkinson, A. J. Newman and K. Nagai	A human postcatalytic spliceosome structure reveals essential roles of metazoan factors for exon ligation.	Spliceosome	P, 3.3 Å	Science 363(6428): 710-714.
2019	Zhang, X., X. Zhan, C. Yan, W. Zhang, D. Liu, J. Lei and Y. Shi	Structures of the human spliceosomes before and after release of the ligated exon.	Spliceosome	P (3.0 Å) and ILS (2.9 Å)	Cell Res 29(4): 274-285.
2019	Charenton, C., M. E. Wilkinson and K. Nagai	Mechanism of 5' splice site transfer for human spliceosome activation.	Spliceosome	pre–B, 3.3 Å Mechanism of 5' splice site transfer for human spliceosome activation	Science 364(6438): 362-367.
2019	Wan, R., R. Bai, C. Yan, J. Lei and Y. Shi	Structures of the Catalytically Activated Yeast Spliceosome Reveal the Mechanism of Branching.	Spliceosome	Mechanism of Branching	Cell 177(2): 339-351 e313.
2020	Zhang, Z., C. L. Will, K. Bertram, O. Dybkov, K. Hartmuth, D. E. Agafonov, R. Hofele, H. Urlaub, B. Kastner, R. Luhrmann and H. Stark	Molecular architecture of the human 17S U2 snRNP.	Spliceosome	The structure of 17s U2 snRNP was analyzed and a complete molecular model of 17s U2 snRNP was obtained	Nature 583(7815): 310-313.
2020	Townsend, C., M. N. Leelaram, D. E. Agafonov, O. Dybkov, C. L. Will, K. Bertram, H. Urlaub, B. Kastner, H. Stark and R. Luhrmann	Mechanism of protein-guided folding of the active site U2/U6 RNA during spliceosome activation.	Spliceosome	Mechanism of protein-guided folding of the active site U2/U6 RNA during spliceosome activation	Science 370(6523).
2021	Bai, R., R. Wan, C. Yan, Q. Jia, J. Lei and Y. Shi	Mechanism of spliceosome remodeling by the ATPase/helicase Prp2 and its coactivator Spp2.	Spliceosome	Mechanism of spliceosome remodeling by the ATPase/helicase Prp2 and its coactivator Spp2	Science 371(6525).
2022	Tholen, J., M. Razew, F. Weis and W. P. Galej	Structural basis of branch site recognition by the human spliceosome.	Spliceosome	A series of high-resolution (2.0-2.2 Å) U2 snRNP structures were identified	Science 375(6576): 50-57.
2019	Yan, C., R. Wan and Y. Shi	Molecular Mechanisms of pre-mRNA Splicing through Structural Biology of the Spliceosome.	Spliceosome	Review	Cold Spring Harb Perspect Biol 11(1).
2020	Wan, R., R. Bai, X. Zhan and Y. Shi	How Is Precursor Messenger RNA Spliced by the Spliceosome?	Spliceosome	Review	Annu Rev Biochem 89: 333-358.
2020	Wilkinson, M. E., C. Charenton and K. Nagai	RNA Splicing by the Spliceosome.	Spliceosome	Review	Annu Rev Biochem 89: 359-388.
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2017	Wong, W., X. C. Bai, B. E. Sleebs, T. Triglia, A. Brown, J. K. Thompson, K. E. Jackson, E. Hanssen, D. S. Marapana, I. S. Fernandez, S. A. Ralph, A. F. Cowman, S. Scheres and J. Baum	Mefloquine targets the Plasmodium falciparum 80S ribosome to inhibit protein synthesis.	Ribosome	Cryo-EM structure of the 80S ribosome of Plasmodium falciparum (3.2 Å)	Nat Microbiol 2: 17031.
2018	Kummer, E., M. Leibundgut, O. Rackham, R. G. Lee, D. Boehringer, A. Filipovska and N. Ban	Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM.	Ribosome	Cryo-EM structure of the complete translation initiation complex from mammalian mitochondria (3.2 Å)	Nature 560 (7717): 263-267.
2019	Kaledhonkar, S., Z. Fu, K. Caban, W. Li, B. Chen, M. Sun, R. J. Gonzalez and J. Frank	Late steps in bacterial translation initiation visualized using time-resolved cryo-EM.	Ribosome	Late steps in bacterial translation initiation visualized using time-resolved cryo-EM	Nature 570 (7761): 400-404.
2020	Waltz, F., H. Soufari, A. Bochler, P. Giege and Y. Hashem	Cryo-EM structure of the RNA-rich plant mitochondrial ribosome.	Ribosome	Cryo-EM structure of the RNA-rich plant mitochondrial ribosome	Nat Plants 6 (4): 377-383.
2020	Loveland, A. B., G. Demo and A. A. Korostelev	Cryo-EM of elongating ribosome with EF-Tu•GTP elucidates tRNA proofreading.	Ribosome	Cryo-EM of elongating ribosome with EF-Tu•GTP elucidates tRNA proofreading	Nature 584 (7822): 640-645.
2020	Aibara, S., V. Singh, A. Modelska and A. Amunts	Structural basis of mitochondrial translation.	Ribosome	Structural basis of mitochondrial translation (3.0 Å)	Elife 9.
2020	Watson, Z. L., F. R. Ward, R. Meheust, O. Ad, A. Schepartz, J. F. Banfield and J. H. Cate	Structure of the bacterial ribosome at 2 A resolution.	Ribosome	Structure of the bacterial ribosome at 2 Å resolution	Elife 9.
2021	Kummer, E., K. N. Schubert, T. Schoenhut, A. Scaiola and N. Ban	Structural basis of translation termination, rescue, and recycling in mammalian mitochondria.	Ribosome	Structural basis of translation termination, rescue, and recycling in mammalian mitochondria	Mol Cell 81 (12): 2566-2582.e6.
2022	Itoh, Y., A. Khawaja, I. Laptev, M. Cipullo, I. Atanassov, P. Sergiev, J. Rorbach and A. Amunts	Mechanism of mitoribosomal small subunit biogenesis and preinitiation.	Ribosome	Mechanism of mitoribosomal small subunit biogenesis and preinitiation	Nature 606 (7914): 603-608.